Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23360

Experiment: L-aspartic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS23355 and BWI76_RS23360 are separated by 125 nucleotidesBWI76_RS23360 and BWI76_RS23365 are separated by 135 nucleotides BWI76_RS23355: BWI76_RS23355 - LacI family transcriptional regulator, at 4,870,203 to 4,871,213 _RS23355 BWI76_RS23360: BWI76_RS23360 - diaminopimelate decarboxylase, at 4,871,339 to 4,872,601 _RS23360 BWI76_RS23365: BWI76_RS23365 - LysR family transcriptional regulator, at 4,872,737 to 4,873,663 _RS23365 Position (kb) 4871 4872 4873Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4870.513 kb on + strand, within BWI76_RS23355at 4870.532 kb on - strand, within BWI76_RS23355at 4870.705 kb on - strand, within BWI76_RS23355at 4870.730 kb on - strand, within BWI76_RS23355at 4870.884 kb on - strand, within BWI76_RS23355at 4871.337 kb on + strandat 4871.385 kb on - strandat 4872.158 kb on + strand, within BWI76_RS23360at 4872.261 kb on + strand, within BWI76_RS23360at 4872.261 kb on + strand, within BWI76_RS23360at 4872.295 kb on + strand, within BWI76_RS23360at 4872.507 kb on + strandat 4873.349 kb on - strand, within BWI76_RS23365at 4873.500 kb on + strandat 4873.500 kb on + strand, within BWI76_RS23365at 4873.508 kb on - strand, within BWI76_RS23365at 4873.534 kb on - strand, within BWI76_RS23365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
remove
4,870,513 + BWI76_RS23355 0.31 +1.3
4,870,532 - BWI76_RS23355 0.33 -2.1
4,870,705 - BWI76_RS23355 0.50 -0.5
4,870,730 - BWI76_RS23355 0.52 +0.5
4,870,884 - BWI76_RS23355 0.67 +0.1
4,871,337 + +0.1
4,871,385 - -5.5
4,872,158 + BWI76_RS23360 0.65 -1.7
4,872,261 + BWI76_RS23360 0.73 -5.1
4,872,261 + BWI76_RS23360 0.73 -2.3
4,872,295 + BWI76_RS23360 0.76 -1.1
4,872,507 + -2.4
4,873,349 - BWI76_RS23365 0.66 -1.0
4,873,500 + -0.8
4,873,500 + BWI76_RS23365 0.82 -3.5
4,873,508 - BWI76_RS23365 0.83 -3.2
4,873,534 - BWI76_RS23365 0.86 +1.8

Or see this region's nucleotide sequence