Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19685

Experiment: L-aspartic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19680 and BWI76_RS19685 are separated by 303 nucleotidesBWI76_RS19685 and BWI76_RS19690 are separated by 158 nucleotides BWI76_RS19680: BWI76_RS19680 - catecholate siderophore receptor CirA, at 4,111,357 to 4,113,330 _RS19680 BWI76_RS19685: BWI76_RS19685 - lysine transporter, at 4,113,634 to 4,115,103 _RS19685 BWI76_RS19690: BWI76_RS19690 - LysR family transcriptional regulator, at 4,115,262 to 4,116,128 _RS19690 Position (kb) 4113 4114 4115 4116Strain fitness (log2 ratio) -3 -2 -1 0 1at 4112.819 kb on - strand, within BWI76_RS19680at 4112.907 kb on - strand, within BWI76_RS19680at 4113.144 kb on - strandat 4113.154 kb on - strandat 4113.320 kb on + strandat 4113.450 kb on + strandat 4113.607 kb on + strandat 4113.697 kb on - strandat 4113.753 kb on - strandat 4113.815 kb on - strand, within BWI76_RS19685at 4113.858 kb on + strand, within BWI76_RS19685at 4113.935 kb on - strand, within BWI76_RS19685at 4114.351 kb on - strand, within BWI76_RS19685at 4114.361 kb on + strand, within BWI76_RS19685at 4114.706 kb on - strand, within BWI76_RS19685at 4114.810 kb on - strand, within BWI76_RS19685at 4114.820 kb on + strand, within BWI76_RS19685at 4114.935 kb on + strand, within BWI76_RS19685at 4114.943 kb on - strand, within BWI76_RS19685at 4115.149 kb on - strandat 4115.558 kb on - strand, within BWI76_RS19690at 4116.025 kb on - strand, within BWI76_RS19690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
remove
4,112,819 - BWI76_RS19680 0.74 +0.3
4,112,907 - BWI76_RS19680 0.79 +0.4
4,113,144 - +0.9
4,113,154 - +0.3
4,113,320 + -0.7
4,113,450 + +0.4
4,113,607 + -1.4
4,113,697 - -2.7
4,113,753 - -1.2
4,113,815 - BWI76_RS19685 0.12 -0.3
4,113,858 + BWI76_RS19685 0.15 -0.2
4,113,935 - BWI76_RS19685 0.20 -1.9
4,114,351 - BWI76_RS19685 0.49 -2.8
4,114,361 + BWI76_RS19685 0.49 -0.7
4,114,706 - BWI76_RS19685 0.73 -2.1
4,114,810 - BWI76_RS19685 0.80 -0.7
4,114,820 + BWI76_RS19685 0.81 -1.0
4,114,935 + BWI76_RS19685 0.89 +1.2
4,114,943 - BWI76_RS19685 0.89 +1.0
4,115,149 - -1.0
4,115,558 - BWI76_RS19690 0.34 -0.8
4,116,025 - BWI76_RS19690 0.88 -0.7

Or see this region's nucleotide sequence