Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19175

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19170 and BWI76_RS19175 are separated by 299 nucleotidesBWI76_RS19175 and BWI76_RS19180 are separated by 234 nucleotides BWI76_RS19170: BWI76_RS19170 - hypothetical protein, at 3,989,528 to 3,990,145 _RS19170 BWI76_RS19175: BWI76_RS19175 - dicarboxylate/amino acid:cation symporter, at 3,990,445 to 3,991,719 _RS19175 BWI76_RS19180: BWI76_RS19180 - diguanylate cyclase, at 3,991,954 to 3,993,468 _RS19180 Position (kb) 3990 3991 3992Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3989.472 kb on - strandat 3989.479 kb on + strandat 3989.481 kb on - strandat 3989.484 kb on + strandat 3989.487 kb on - strandat 3989.491 kb on + strandat 3989.492 kb on - strandat 3989.504 kb on - strandat 3989.504 kb on - strandat 3989.504 kb on - strandat 3989.585 kb on - strandat 3989.594 kb on - strand, within BWI76_RS19170at 3989.600 kb on - strand, within BWI76_RS19170at 3989.687 kb on - strand, within BWI76_RS19170at 3989.695 kb on - strand, within BWI76_RS19170at 3989.708 kb on - strand, within BWI76_RS19170at 3989.710 kb on + strand, within BWI76_RS19170at 3989.710 kb on + strand, within BWI76_RS19170at 3989.718 kb on - strand, within BWI76_RS19170at 3989.718 kb on - strand, within BWI76_RS19170at 3989.718 kb on - strand, within BWI76_RS19170at 3989.721 kb on + strand, within BWI76_RS19170at 3989.729 kb on - strand, within BWI76_RS19170at 3989.729 kb on - strand, within BWI76_RS19170at 3989.731 kb on - strand, within BWI76_RS19170at 3989.756 kb on + strand, within BWI76_RS19170at 3989.764 kb on - strand, within BWI76_RS19170at 3989.764 kb on - strand, within BWI76_RS19170at 3989.764 kb on - strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strandat 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.766 kb on + strand, within BWI76_RS19170at 3989.769 kb on + strand, within BWI76_RS19170at 3989.769 kb on - strand, within BWI76_RS19170at 3989.774 kb on - strand, within BWI76_RS19170at 3989.774 kb on - strand, within BWI76_RS19170at 3989.774 kb on - strand, within BWI76_RS19170at 3989.774 kb on - strand, within BWI76_RS19170at 3989.774 kb on - strand, within BWI76_RS19170at 3989.774 kb on - strand, within BWI76_RS19170at 3989.774 kb on - strand, within BWI76_RS19170at 3989.774 kb on - strand, within BWI76_RS19170at 3989.814 kb on - strand, within BWI76_RS19170at 3989.815 kb on - strand, within BWI76_RS19170at 3989.914 kb on - strandat 3989.914 kb on - strand, within BWI76_RS19170at 3989.919 kb on - strand, within BWI76_RS19170at 3989.937 kb on - strand, within BWI76_RS19170at 3989.937 kb on - strand, within BWI76_RS19170at 3989.945 kb on - strand, within BWI76_RS19170at 3989.945 kb on - strand, within BWI76_RS19170at 3989.945 kb on - strand, within BWI76_RS19170at 3989.959 kb on + strand, within BWI76_RS19170at 3990.036 kb on - strand, within BWI76_RS19170at 3990.036 kb on - strand, within BWI76_RS19170at 3990.134 kb on - strandat 3990.141 kb on + strandat 3990.148 kb on - strandat 3990.149 kb on - strandat 3990.240 kb on + strandat 3990.254 kb on + strandat 3990.257 kb on - strandat 3990.262 kb on + strandat 3990.268 kb on - strandat 3990.270 kb on - strandat 3990.274 kb on + strandat 3990.327 kb on + strandat 3990.355 kb on + strandat 3990.378 kb on + strandat 3990.382 kb on - strandat 3990.399 kb on + strandat 3990.399 kb on + strandat 3990.407 kb on - strandat 3990.407 kb on - strandat 3990.407 kb on - strandat 3990.407 kb on - strandat 3990.423 kb on + strandat 3990.423 kb on + strandat 3990.430 kb on - strandat 3990.430 kb on - strandat 3990.476 kb on + strandat 3990.536 kb on + strandat 3990.590 kb on - strandat 3990.600 kb on + strand, within BWI76_RS19175at 3990.638 kb on + strand, within BWI76_RS19175at 3990.792 kb on - strand, within BWI76_RS19175at 3990.792 kb on - strand, within BWI76_RS19175at 3990.797 kb on - strand, within BWI76_RS19175at 3990.804 kb on + strand, within BWI76_RS19175at 3990.804 kb on + strand, within BWI76_RS19175at 3990.804 kb on + strand, within BWI76_RS19175at 3990.812 kb on - strand, within BWI76_RS19175at 3990.812 kb on - strand, within BWI76_RS19175at 3990.874 kb on + strand, within BWI76_RS19175at 3990.881 kb on - strand, within BWI76_RS19175at 3990.978 kb on + strand, within BWI76_RS19175at 3990.986 kb on - strand, within BWI76_RS19175at 3991.052 kb on + strand, within BWI76_RS19175at 3991.254 kb on - strand, within BWI76_RS19175at 3991.401 kb on + strand, within BWI76_RS19175at 3991.409 kb on - strand, within BWI76_RS19175at 3991.420 kb on - strand, within BWI76_RS19175at 3991.542 kb on - strand, within BWI76_RS19175at 3991.542 kb on - strand, within BWI76_RS19175at 3991.642 kb on - strandat 3991.642 kb on - strandat 3991.664 kb on + strandat 3991.668 kb on - strandat 3991.674 kb on - strandat 3991.685 kb on + strandat 3992.030 kb on + strandat 3992.045 kb on + strandat 3992.069 kb on + strandat 3992.099 kb on + strandat 3992.099 kb on + strandat 3992.107 kb on - strand, within BWI76_RS19180at 3992.107 kb on - strand, within BWI76_RS19180at 3992.164 kb on - strand, within BWI76_RS19180at 3992.263 kb on - strand, within BWI76_RS19180at 3992.263 kb on - strand, within BWI76_RS19180at 3992.348 kb on + strand, within BWI76_RS19180at 3992.414 kb on + strand, within BWI76_RS19180at 3992.459 kb on + strand, within BWI76_RS19180at 3992.599 kb on + strand, within BWI76_RS19180at 3992.624 kb on - strand, within BWI76_RS19180

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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3,989,472 - +1.0
3,989,479 + +0.7
3,989,481 - +0.7
3,989,484 + -0.5
3,989,487 - +0.1
3,989,491 + -0.3
3,989,492 - -0.9
3,989,504 - +0.9
3,989,504 - +1.1
3,989,504 - -0.1
3,989,585 - +0.7
3,989,594 - BWI76_RS19170 0.11 +0.9
3,989,600 - BWI76_RS19170 0.12 -1.3
3,989,687 - BWI76_RS19170 0.26 -1.2
3,989,695 - BWI76_RS19170 0.27 +2.5
3,989,708 - BWI76_RS19170 0.29 -0.2
3,989,710 + BWI76_RS19170 0.29 -0.2
3,989,710 + BWI76_RS19170 0.29 -0.3
3,989,718 - BWI76_RS19170 0.31 -1.8
3,989,718 - BWI76_RS19170 0.31 -0.1
3,989,718 - BWI76_RS19170 0.31 +0.0
3,989,721 + BWI76_RS19170 0.31 -0.1
3,989,729 - BWI76_RS19170 0.33 +0.5
3,989,729 - BWI76_RS19170 0.33 -1.3
3,989,731 - BWI76_RS19170 0.33 -1.2
3,989,756 + BWI76_RS19170 0.37 -2.4
3,989,764 - BWI76_RS19170 0.38 +0.5
3,989,764 - BWI76_RS19170 0.38 -0.2
3,989,764 - BWI76_RS19170 0.38 -0.2
3,989,766 + BWI76_RS19170 0.39 -0.8
3,989,766 + BWI76_RS19170 0.39 +0.4
3,989,766 + +1.6
3,989,766 + BWI76_RS19170 0.39 +0.2
3,989,766 + BWI76_RS19170 0.39 +1.3
3,989,766 + BWI76_RS19170 0.39 -1.4
3,989,766 + BWI76_RS19170 0.39 -0.9
3,989,766 + BWI76_RS19170 0.39 +0.2
3,989,766 + BWI76_RS19170 0.39 -0.9
3,989,766 + BWI76_RS19170 0.39 -3.2
3,989,766 + BWI76_RS19170 0.39 -1.8
3,989,766 + BWI76_RS19170 0.39 +0.2
3,989,766 + BWI76_RS19170 0.39 -0.3
3,989,766 + BWI76_RS19170 0.39 -1.0
3,989,769 + BWI76_RS19170 0.39 +0.3
3,989,769 - BWI76_RS19170 0.39 +0.3
3,989,774 - BWI76_RS19170 0.40 -0.9
3,989,774 - BWI76_RS19170 0.40 +1.0
3,989,774 - BWI76_RS19170 0.40 -0.2
3,989,774 - BWI76_RS19170 0.40 +0.3
3,989,774 - BWI76_RS19170 0.40 +0.5
3,989,774 - BWI76_RS19170 0.40 +0.1
3,989,774 - BWI76_RS19170 0.40 +0.1
3,989,774 - BWI76_RS19170 0.40 -0.0
3,989,814 - BWI76_RS19170 0.46 -0.7
3,989,815 - BWI76_RS19170 0.46 -1.2
3,989,914 - -0.0
3,989,914 - BWI76_RS19170 0.62 -0.6
3,989,919 - BWI76_RS19170 0.63 +0.3
3,989,937 - BWI76_RS19170 0.66 +0.3
3,989,937 - BWI76_RS19170 0.66 -0.9
3,989,945 - BWI76_RS19170 0.67 +0.9
3,989,945 - BWI76_RS19170 0.67 -0.7
3,989,945 - BWI76_RS19170 0.67 +0.1
3,989,959 + BWI76_RS19170 0.70 +0.6
3,990,036 - BWI76_RS19170 0.82 -2.3
3,990,036 - BWI76_RS19170 0.82 +0.9
3,990,134 - +0.5
3,990,141 + -0.9
3,990,148 - -0.0
3,990,149 - +0.4
3,990,240 + +0.5
3,990,254 + +0.7
3,990,257 - -0.9
3,990,262 + -0.3
3,990,268 - -1.8
3,990,270 - +0.3
3,990,274 + -1.0
3,990,327 + -0.1
3,990,355 + -2.0
3,990,378 + +0.4
3,990,382 - -0.7
3,990,399 + -0.9
3,990,399 + -0.2
3,990,407 - +1.4
3,990,407 - +0.5
3,990,407 - -0.0
3,990,407 - -0.1
3,990,423 + -0.3
3,990,423 + -0.4
3,990,430 - -0.7
3,990,430 - -1.2
3,990,476 + -3.0
3,990,536 + +0.9
3,990,590 - -0.4
3,990,600 + BWI76_RS19175 0.12 -1.3
3,990,638 + BWI76_RS19175 0.15 -0.8
3,990,792 - BWI76_RS19175 0.27 -1.3
3,990,792 - BWI76_RS19175 0.27 -1.0
3,990,797 - BWI76_RS19175 0.28 -1.4
3,990,804 + BWI76_RS19175 0.28 -0.0
3,990,804 + BWI76_RS19175 0.28 -1.0
3,990,804 + BWI76_RS19175 0.28 -0.6
3,990,812 - BWI76_RS19175 0.29 -0.6
3,990,812 - BWI76_RS19175 0.29 -1.4
3,990,874 + BWI76_RS19175 0.34 -0.6
3,990,881 - BWI76_RS19175 0.34 -0.7
3,990,978 + BWI76_RS19175 0.42 -2.0
3,990,986 - BWI76_RS19175 0.42 -0.5
3,991,052 + BWI76_RS19175 0.48 -2.1
3,991,254 - BWI76_RS19175 0.63 -1.5
3,991,401 + BWI76_RS19175 0.75 -0.4
3,991,409 - BWI76_RS19175 0.76 -1.6
3,991,420 - BWI76_RS19175 0.76 -1.6
3,991,542 - BWI76_RS19175 0.86 -0.5
3,991,542 - BWI76_RS19175 0.86 -2.6
3,991,642 - -1.2
3,991,642 - -0.9
3,991,664 + -3.1
3,991,668 - +0.4
3,991,674 - +1.6
3,991,685 + -0.4
3,992,030 + +0.1
3,992,045 + +0.3
3,992,069 + +1.3
3,992,099 + -0.3
3,992,099 + +0.2
3,992,107 - BWI76_RS19180 0.10 +0.5
3,992,107 - BWI76_RS19180 0.10 +3.6
3,992,164 - BWI76_RS19180 0.14 +0.6
3,992,263 - BWI76_RS19180 0.20 -1.1
3,992,263 - BWI76_RS19180 0.20 -0.3
3,992,348 + BWI76_RS19180 0.26 +0.6
3,992,414 + BWI76_RS19180 0.30 -0.3
3,992,459 + BWI76_RS19180 0.33 +0.4
3,992,599 + BWI76_RS19180 0.43 +0.1
3,992,624 - BWI76_RS19180 0.44 -0.1

Or see this region's nucleotide sequence