Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17720

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17710 and BWI76_RS17715 are separated by 56 nucleotidesBWI76_RS17715 and BWI76_RS17720 are separated by 95 nucleotidesBWI76_RS17720 and BWI76_RS17725 are separated by 92 nucleotides BWI76_RS17710: BWI76_RS17710 - hypothetical protein, at 3,682,743 to 3,682,964 _RS17710 BWI76_RS17715: BWI76_RS17715 - murein transglycosylase, at 3,683,021 to 3,683,632 _RS17715 BWI76_RS17720: BWI76_RS17720 - muramoyltetrapeptide carboxypeptidase, at 3,683,728 to 3,684,642 _RS17720 BWI76_RS17725: BWI76_RS17725 - K+/H+ antiporter, at 3,684,735 to 3,686,468 _RS17725 Position (kb) 3683 3684 3685Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3682.738 kb on + strandat 3682.739 kb on - strandat 3682.754 kb on + strandat 3682.762 kb on - strandat 3682.790 kb on - strand, within BWI76_RS17710at 3682.810 kb on + strand, within BWI76_RS17710at 3682.826 kb on - strand, within BWI76_RS17710at 3682.851 kb on + strand, within BWI76_RS17710at 3682.851 kb on + strand, within BWI76_RS17710at 3682.856 kb on + strandat 3682.859 kb on - strand, within BWI76_RS17710at 3682.859 kb on - strand, within BWI76_RS17710at 3682.859 kb on - strand, within BWI76_RS17710at 3682.859 kb on - strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strandat 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.861 kb on + strand, within BWI76_RS17710at 3682.864 kb on - strand, within BWI76_RS17710at 3682.864 kb on - strand, within BWI76_RS17710at 3682.869 kb on - strand, within BWI76_RS17710at 3682.869 kb on - strand, within BWI76_RS17710at 3682.869 kb on - strandat 3682.869 kb on - strand, within BWI76_RS17710at 3682.869 kb on - strand, within BWI76_RS17710at 3682.933 kb on + strand, within BWI76_RS17710at 3682.933 kb on + strand, within BWI76_RS17710at 3682.933 kb on + strand, within BWI76_RS17710at 3682.933 kb on + strand, within BWI76_RS17710at 3682.934 kb on + strand, within BWI76_RS17710at 3682.942 kb on - strandat 3682.970 kb on + strandat 3682.977 kb on + strandat 3682.993 kb on + strandat 3682.993 kb on + strandat 3683.187 kb on - strand, within BWI76_RS17715at 3683.192 kb on + strand, within BWI76_RS17715at 3683.193 kb on + strand, within BWI76_RS17715at 3683.199 kb on - strand, within BWI76_RS17715at 3683.336 kb on + strand, within BWI76_RS17715at 3683.846 kb on - strand, within BWI76_RS17720at 3684.582 kb on + strandat 3684.760 kb on - strandat 3684.819 kb on + strandat 3684.853 kb on + strandat 3684.985 kb on - strand, within BWI76_RS17725at 3685.050 kb on - strand, within BWI76_RS17725at 3685.055 kb on - strand, within BWI76_RS17725at 3685.099 kb on - strand, within BWI76_RS17725at 3685.246 kb on + strand, within BWI76_RS17725at 3685.485 kb on - strand, within BWI76_RS17725

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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3,682,738 + -0.1
3,682,739 - -0.6
3,682,754 + -0.7
3,682,762 - -0.1
3,682,790 - BWI76_RS17710 0.21 -0.1
3,682,810 + BWI76_RS17710 0.30 +0.9
3,682,826 - BWI76_RS17710 0.37 -0.1
3,682,851 + BWI76_RS17710 0.49 +2.3
3,682,851 + BWI76_RS17710 0.49 -2.6
3,682,856 + +0.9
3,682,859 - BWI76_RS17710 0.52 +0.1
3,682,859 - BWI76_RS17710 0.52 +1.0
3,682,859 - BWI76_RS17710 0.52 +1.0
3,682,859 - BWI76_RS17710 0.52 -1.3
3,682,861 + BWI76_RS17710 0.53 +1.2
3,682,861 + BWI76_RS17710 0.53 -1.1
3,682,861 + +0.3
3,682,861 + BWI76_RS17710 0.53 -0.1
3,682,861 + BWI76_RS17710 0.53 +0.3
3,682,861 + BWI76_RS17710 0.53 -0.9
3,682,861 + BWI76_RS17710 0.53 -0.4
3,682,861 + BWI76_RS17710 0.53 -0.2
3,682,861 + BWI76_RS17710 0.53 +1.9
3,682,861 + BWI76_RS17710 0.53 -1.0
3,682,861 + BWI76_RS17710 0.53 +0.5
3,682,864 - BWI76_RS17710 0.55 -1.7
3,682,864 - BWI76_RS17710 0.55 -0.2
3,682,869 - BWI76_RS17710 0.57 -3.1
3,682,869 - BWI76_RS17710 0.57 -1.8
3,682,869 - +0.9
3,682,869 - BWI76_RS17710 0.57 -2.1
3,682,869 - BWI76_RS17710 0.57 -0.7
3,682,933 + BWI76_RS17710 0.86 -0.1
3,682,933 + BWI76_RS17710 0.86 +0.5
3,682,933 + BWI76_RS17710 0.86 +1.2
3,682,933 + BWI76_RS17710 0.86 -0.8
3,682,934 + BWI76_RS17710 0.86 +0.4
3,682,942 - +2.2
3,682,970 + +1.1
3,682,977 + -1.5
3,682,993 + -0.5
3,682,993 + +2.5
3,683,187 - BWI76_RS17715 0.27 +0.0
3,683,192 + BWI76_RS17715 0.28 -0.1
3,683,193 + BWI76_RS17715 0.28 -1.1
3,683,199 - BWI76_RS17715 0.29 +0.2
3,683,336 + BWI76_RS17715 0.51 +0.5
3,683,846 - BWI76_RS17720 0.13 -1.6
3,684,582 + -3.2
3,684,760 - +1.0
3,684,819 + +0.5
3,684,853 + -0.6
3,684,985 - BWI76_RS17725 0.14 -0.0
3,685,050 - BWI76_RS17725 0.18 +0.4
3,685,055 - BWI76_RS17725 0.18 -0.5
3,685,099 - BWI76_RS17725 0.21 -2.2
3,685,246 + BWI76_RS17725 0.29 -0.2
3,685,485 - BWI76_RS17725 0.43 +0.4

Or see this region's nucleotide sequence