Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17345

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17340 and BWI76_RS17345 are separated by 311 nucleotidesBWI76_RS17345 and BWI76_RS17350 are separated by 10 nucleotidesBWI76_RS17350 and BWI76_RS17355 overlap by 4 nucleotides BWI76_RS17340: BWI76_RS17340 - NarK family nitrate/nitrite MFS transporter, at 3,592,448 to 3,593,836 _RS17340 BWI76_RS17345: BWI76_RS17345 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 3,594,148 to 3,595,926 _RS17345 BWI76_RS17350: BWI76_RS17350 - DNA-binding response regulator, at 3,595,937 to 3,596,587 _RS17350 BWI76_RS17355: BWI76_RS17355 - YchO family inverse autotransporter domain-containing protein, at 3,596,584 to 3,597,963 _RS17355 Position (kb) 3594 3595 3596Strain fitness (log2 ratio) -2 -1 0 1at 3593.420 kb on - strand, within BWI76_RS17340at 3593.531 kb on - strand, within BWI76_RS17340at 3593.651 kb on - strandat 3593.832 kb on + strandat 3593.842 kb on + strandat 3594.265 kb on + strandat 3594.273 kb on - strandat 3594.325 kb on - strandat 3594.618 kb on + strand, within BWI76_RS17345at 3595.056 kb on + strand, within BWI76_RS17345at 3595.157 kb on + strand, within BWI76_RS17345at 3595.701 kb on + strand, within BWI76_RS17345at 3596.379 kb on + strand, within BWI76_RS17350at 3596.476 kb on + strand, within BWI76_RS17350at 3596.924 kb on - strand, within BWI76_RS17355

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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3,593,420 - BWI76_RS17340 0.70 -0.1
3,593,531 - BWI76_RS17340 0.78 -1.3
3,593,651 - +1.1
3,593,832 + -0.5
3,593,842 + -0.7
3,594,265 + -0.0
3,594,273 - +0.1
3,594,325 - -0.6
3,594,618 + BWI76_RS17345 0.26 -0.7
3,595,056 + BWI76_RS17345 0.51 -0.5
3,595,157 + BWI76_RS17345 0.57 -2.2
3,595,701 + BWI76_RS17345 0.87 -2.0
3,596,379 + BWI76_RS17350 0.68 +1.1
3,596,476 + BWI76_RS17350 0.83 +0.4
3,596,924 - BWI76_RS17355 0.25 +0.3

Or see this region's nucleotide sequence