Experiment: L-aspartic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15895 and BWI76_RS15900 are separated by 208 nucleotides BWI76_RS15900 and BWI76_RS15905 are separated by 136 nucleotides BWI76_RS15905 and BWI76_RS15910 are separated by 60 nucleotides BWI76_RS15910 and BWI76_RS15915 overlap by 7 nucleotides
BWI76_RS15895: BWI76_RS15895 - starvation-sensing protein RspA, at 3,298,205 to 3,299,419
_RS15895
BWI76_RS15900: BWI76_RS15900 - hypothetical protein, at 3,299,628 to 3,299,953
_RS15900
BWI76_RS15905: BWI76_RS15905 - hypothetical protein, at 3,300,090 to 3,300,431
_RS15905
BWI76_RS15910: BWI76_RS15910 - spermidine acetyltransferase, at 3,300,492 to 3,301,052
_RS15910
BWI76_RS15915: BWI76_RS15915 - YnfC family lipoprotein, at 3,301,046 to 3,301,756
_RS15915
Position (kb)
3300
3301 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3299.171 kb on + strand, within BWI76_RS15895 at 3299.265 kb on - strand, within BWI76_RS15895 at 3299.275 kb on - strand, within BWI76_RS15895 at 3299.327 kb on - strand at 3299.536 kb on - strand at 3299.569 kb on - strand at 3299.633 kb on - strand at 3299.744 kb on - strand, within BWI76_RS15900 at 3299.781 kb on - strand, within BWI76_RS15900 at 3300.394 kb on + strand, within BWI76_RS15905 at 3300.402 kb on - strand at 3300.402 kb on - strand at 3300.545 kb on - strand at 3300.545 kb on - strand at 3300.847 kb on + strand, within BWI76_RS15910 at 3301.015 kb on - strand at 3301.038 kb on + strand at 3301.082 kb on - strand at 3301.114 kb on - strand at 3301.123 kb on + strand, within BWI76_RS15915 at 3301.234 kb on + strand, within BWI76_RS15915
Per-strain Table
Position Strand Gene LocusTag Fraction L-aspartic (N) remove 3,299,171 + BWI76_RS15895 0.80 +1.1 3,299,265 - BWI76_RS15895 0.87 +0.9 3,299,275 - BWI76_RS15895 0.88 +0.3 3,299,327 - -0.2 3,299,536 - -0.3 3,299,569 - +0.5 3,299,633 - +0.5 3,299,744 - BWI76_RS15900 0.36 -1.3 3,299,781 - BWI76_RS15900 0.47 -0.3 3,300,394 + BWI76_RS15905 0.89 +2.4 3,300,402 - +0.4 3,300,402 - -0.5 3,300,545 - +0.4 3,300,545 - +0.4 3,300,847 + BWI76_RS15910 0.63 -2.1 3,301,015 - +1.6 3,301,038 + -1.3 3,301,082 - -0.1 3,301,114 - -0.7 3,301,123 + BWI76_RS15915 0.11 -0.4 3,301,234 + BWI76_RS15915 0.26 +0.8
Or see this region's nucleotide sequence