Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15060

Experiment: L-aspartic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15055 and BWI76_RS15060 are separated by 429 nucleotidesBWI76_RS15060 and BWI76_RS15065 are separated by 114 nucleotidesBWI76_RS15065 and BWI76_RS15070 are separated by 36 nucleotides BWI76_RS15055: BWI76_RS15055 - lysine transporter LysE, at 3,151,275 to 3,151,895 _RS15055 BWI76_RS15060: BWI76_RS15060 - MarR family transcriptional regulator, at 3,152,325 to 3,152,822 _RS15060 BWI76_RS15065: BWI76_RS15065 - hypothetical protein, at 3,152,937 to 3,153,329 _RS15065 BWI76_RS15070: BWI76_RS15070 - non-ribosomal peptide synthetase, at 3,153,366 to 3,157,736 _RS15070 Position (kb) 3152 3153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3151.390 kb on + strand, within BWI76_RS15055at 3151.462 kb on + strand, within BWI76_RS15055at 3151.577 kb on - strand, within BWI76_RS15055at 3151.596 kb on + strand, within BWI76_RS15055at 3151.604 kb on - strand, within BWI76_RS15055at 3151.627 kb on - strand, within BWI76_RS15055at 3151.662 kb on - strand, within BWI76_RS15055at 3151.671 kb on - strand, within BWI76_RS15055at 3151.673 kb on + strand, within BWI76_RS15055at 3151.680 kb on + strand, within BWI76_RS15055at 3151.680 kb on + strand, within BWI76_RS15055at 3151.681 kb on - strand, within BWI76_RS15055at 3151.682 kb on - strand, within BWI76_RS15055at 3151.682 kb on - strand, within BWI76_RS15055at 3151.688 kb on - strand, within BWI76_RS15055at 3151.688 kb on - strand, within BWI76_RS15055at 3151.701 kb on - strand, within BWI76_RS15055at 3151.708 kb on - strand, within BWI76_RS15055at 3151.708 kb on - strand, within BWI76_RS15055at 3151.712 kb on + strand, within BWI76_RS15055at 3151.727 kb on - strand, within BWI76_RS15055at 3151.746 kb on + strandat 3151.761 kb on - strand, within BWI76_RS15055at 3151.822 kb on + strand, within BWI76_RS15055at 3151.843 kb on - strandat 3151.848 kb on - strandat 3151.871 kb on - strandat 3151.951 kb on + strandat 3151.951 kb on + strandat 3151.951 kb on + strandat 3151.951 kb on + strandat 3151.951 kb on + strandat 3151.959 kb on - strandat 3151.959 kb on - strandat 3151.959 kb on - strandat 3151.990 kb on - strandat 3152.129 kb on + strandat 3152.438 kb on - strand, within BWI76_RS15060at 3152.442 kb on - strand, within BWI76_RS15060at 3152.457 kb on - strand, within BWI76_RS15060at 3152.495 kb on - strand, within BWI76_RS15060at 3152.695 kb on - strand, within BWI76_RS15060at 3152.729 kb on - strand, within BWI76_RS15060at 3153.179 kb on - strand, within BWI76_RS15065at 3153.293 kb on - strandat 3153.293 kb on - strandat 3153.414 kb on - strandat 3153.428 kb on + strandat 3153.428 kb on + strandat 3153.436 kb on - strandat 3153.436 kb on - strandat 3153.436 kb on - strandat 3153.436 kb on - strandat 3153.436 kb on - strandat 3153.436 kb on - strandat 3153.452 kb on + strandat 3153.452 kb on + strandat 3153.452 kb on + strandat 3153.469 kb on - strandat 3153.540 kb on + strandat 3153.544 kb on - strandat 3153.548 kb on - strandat 3153.555 kb on + strandat 3153.555 kb on + strandat 3153.555 kb on + strandat 3153.562 kb on + strandat 3153.568 kb on - strandat 3153.572 kb on + strandat 3153.580 kb on - strandat 3153.778 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
remove
3,151,390 + BWI76_RS15055 0.19 -0.8
3,151,462 + BWI76_RS15055 0.30 -0.1
3,151,577 - BWI76_RS15055 0.49 +0.4
3,151,596 + BWI76_RS15055 0.52 +0.3
3,151,604 - BWI76_RS15055 0.53 -0.6
3,151,627 - BWI76_RS15055 0.57 +0.3
3,151,662 - BWI76_RS15055 0.62 -0.2
3,151,671 - BWI76_RS15055 0.64 +1.0
3,151,673 + BWI76_RS15055 0.64 -1.4
3,151,680 + BWI76_RS15055 0.65 -1.5
3,151,680 + BWI76_RS15055 0.65 +0.5
3,151,681 - BWI76_RS15055 0.65 +0.0
3,151,682 - BWI76_RS15055 0.66 -1.9
3,151,682 - BWI76_RS15055 0.66 +0.5
3,151,688 - BWI76_RS15055 0.67 -0.0
3,151,688 - BWI76_RS15055 0.67 -0.0
3,151,701 - BWI76_RS15055 0.69 +1.4
3,151,708 - BWI76_RS15055 0.70 -0.2
3,151,708 - BWI76_RS15055 0.70 -0.6
3,151,712 + BWI76_RS15055 0.70 -0.5
3,151,727 - BWI76_RS15055 0.73 -0.4
3,151,746 + -0.9
3,151,761 - BWI76_RS15055 0.78 -1.0
3,151,822 + BWI76_RS15055 0.88 +3.9
3,151,843 - +0.3
3,151,848 - -0.9
3,151,871 - +0.1
3,151,951 + -2.4
3,151,951 + +0.5
3,151,951 + -1.3
3,151,951 + -2.2
3,151,951 + +0.9
3,151,959 - -0.4
3,151,959 - -0.2
3,151,959 - +0.2
3,151,990 - -1.6
3,152,129 + +0.0
3,152,438 - BWI76_RS15060 0.23 +0.3
3,152,442 - BWI76_RS15060 0.23 -2.6
3,152,457 - BWI76_RS15060 0.27 +0.9
3,152,495 - BWI76_RS15060 0.34 -1.0
3,152,695 - BWI76_RS15060 0.74 +0.1
3,152,729 - BWI76_RS15060 0.81 -1.6
3,153,179 - BWI76_RS15065 0.62 +0.3
3,153,293 - -1.1
3,153,293 - +0.2
3,153,414 - -0.2
3,153,428 + -0.5
3,153,428 + +1.2
3,153,436 - +2.5
3,153,436 - +1.5
3,153,436 - -1.5
3,153,436 - +1.8
3,153,436 - -3.2
3,153,436 - +1.3
3,153,452 + +1.1
3,153,452 + -1.9
3,153,452 + +0.7
3,153,469 - -1.1
3,153,540 + -0.5
3,153,544 - +1.9
3,153,548 - -0.7
3,153,555 + +1.7
3,153,555 + +0.7
3,153,555 + -0.6
3,153,562 + -0.8
3,153,568 - -0.3
3,153,572 + +1.9
3,153,580 - +0.6
3,153,778 - -0.6

Or see this region's nucleotide sequence