Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13215

Experiment: L-aspartic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13210 and BWI76_RS13215 are separated by 295 nucleotidesBWI76_RS13215 and BWI76_RS13220 are separated by 243 nucleotidesBWI76_RS13220 and BWI76_RS13225 are separated by 86 nucleotides BWI76_RS13210: BWI76_RS13210 - aldehyde dehydrogenase, at 2,756,501 to 2,757,940 _RS13210 BWI76_RS13215: BWI76_RS13215 - type I glyceraldehyde-3-phosphate dehydrogenase, at 2,758,236 to 2,759,234 _RS13215 BWI76_RS13220: BWI76_RS13220 - N-acetyltransferase, at 2,759,478 to 2,759,972 _RS13220 BWI76_RS13225: BWI76_RS13225 - hypothetical protein, at 2,760,059 to 2,760,985 _RS13225 Position (kb) 2758 2759 2760Strain fitness (log2 ratio) -2 -1 0 1 2at 2757.535 kb on + strand, within BWI76_RS13210at 2757.580 kb on - strand, within BWI76_RS13210at 2757.607 kb on + strand, within BWI76_RS13210at 2757.664 kb on + strand, within BWI76_RS13210at 2757.687 kb on + strand, within BWI76_RS13210at 2758.039 kb on - strandat 2758.087 kb on + strandat 2758.335 kb on - strandat 2758.950 kb on - strand, within BWI76_RS13215at 2759.150 kb on + strandat 2759.150 kb on + strandat 2759.153 kb on + strandat 2759.158 kb on - strandat 2759.204 kb on + strandat 2759.454 kb on + strandat 2759.524 kb on - strandat 2759.681 kb on - strand, within BWI76_RS13220at 2759.835 kb on + strand, within BWI76_RS13220at 2760.021 kb on - strandat 2760.034 kb on - strandat 2760.103 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
remove
2,757,535 + BWI76_RS13210 0.72 +0.6
2,757,580 - BWI76_RS13210 0.75 -0.2
2,757,607 + BWI76_RS13210 0.77 +0.2
2,757,664 + BWI76_RS13210 0.81 -0.1
2,757,687 + BWI76_RS13210 0.82 -0.0
2,758,039 - +1.3
2,758,087 + +2.5
2,758,335 - +0.1
2,758,950 - BWI76_RS13215 0.71 -1.0
2,759,150 + -2.3
2,759,150 + +0.2
2,759,153 + -0.6
2,759,158 - -1.5
2,759,204 + +0.6
2,759,454 + -1.6
2,759,524 - +0.3
2,759,681 - BWI76_RS13220 0.41 -0.5
2,759,835 + BWI76_RS13220 0.72 -0.0
2,760,021 - +0.3
2,760,034 - -0.6
2,760,103 - +0.5

Or see this region's nucleotide sequence