Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12695

Experiment: L-aspartic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12690 and BWI76_RS12695 are separated by 342 nucleotidesBWI76_RS12695 and BWI76_RS12700 are separated by 277 nucleotidesBWI76_RS12700 and BWI76_RS12705 overlap by 50 nucleotides BWI76_RS12690: BWI76_RS12690 - LuxR family transcriptional regulator, at 2,645,807 to 2,646,415 _RS12690 BWI76_RS12695: BWI76_RS12695 - zinc transporter ZntB, at 2,646,758 to 2,647,741 _RS12695 BWI76_RS12700: BWI76_RS12700 - hypothetical protein, at 2,648,019 to 2,648,273 _RS12700 BWI76_RS12705: BWI76_RS12705 - ATP-dependent RNA helicase, at 2,648,224 to 2,649,597 _RS12705 Position (kb) 2646 2647 2648Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2645.758 kb on - strandat 2645.797 kb on + strandat 2645.801 kb on + strandat 2645.900 kb on + strand, within BWI76_RS12690at 2645.903 kb on + strand, within BWI76_RS12690at 2645.940 kb on + strand, within BWI76_RS12690at 2645.940 kb on + strand, within BWI76_RS12690at 2645.940 kb on + strand, within BWI76_RS12690at 2645.940 kb on + strand, within BWI76_RS12690at 2645.940 kb on + strand, within BWI76_RS12690at 2645.948 kb on - strand, within BWI76_RS12690at 2645.948 kb on - strand, within BWI76_RS12690at 2645.948 kb on - strand, within BWI76_RS12690at 2645.948 kb on - strand, within BWI76_RS12690at 2645.973 kb on + strand, within BWI76_RS12690at 2646.078 kb on + strand, within BWI76_RS12690at 2646.078 kb on + strand, within BWI76_RS12690at 2646.078 kb on + strand, within BWI76_RS12690at 2646.078 kb on + strand, within BWI76_RS12690at 2646.078 kb on + strand, within BWI76_RS12690at 2646.078 kb on + strand, within BWI76_RS12690at 2646.086 kb on - strand, within BWI76_RS12690at 2646.086 kb on - strand, within BWI76_RS12690at 2646.086 kb on - strand, within BWI76_RS12690at 2646.145 kb on + strand, within BWI76_RS12690at 2646.211 kb on + strand, within BWI76_RS12690at 2646.261 kb on + strand, within BWI76_RS12690at 2646.261 kb on + strand, within BWI76_RS12690at 2646.261 kb on + strand, within BWI76_RS12690at 2646.267 kb on - strand, within BWI76_RS12690at 2646.360 kb on + strandat 2646.360 kb on + strandat 2646.360 kb on + strandat 2646.360 kb on + strandat 2646.396 kb on + strandat 2646.396 kb on + strandat 2646.397 kb on + strandat 2646.404 kb on - strandat 2646.404 kb on - strandat 2646.499 kb on + strandat 2646.534 kb on + strandat 2646.534 kb on + strandat 2646.534 kb on + strandat 2646.534 kb on + strandat 2646.534 kb on + strandat 2646.534 kb on + strandat 2646.534 kb on + strandat 2646.534 kb on + strandat 2646.538 kb on + strandat 2646.545 kb on + strandat 2646.548 kb on + strandat 2646.550 kb on + strandat 2646.560 kb on + strandat 2646.599 kb on + strandat 2646.601 kb on + strandat 2646.601 kb on + strandat 2646.685 kb on + strandat 2646.698 kb on - strandat 2646.725 kb on + strandat 2646.742 kb on + strandat 2646.765 kb on + strandat 2646.774 kb on + strandat 2646.779 kb on + strandat 2646.831 kb on + strandat 2646.839 kb on - strandat 2646.902 kb on - strand, within BWI76_RS12695at 2647.035 kb on - strand, within BWI76_RS12695at 2647.127 kb on + strand, within BWI76_RS12695at 2647.398 kb on + strand, within BWI76_RS12695at 2647.475 kb on - strand, within BWI76_RS12695at 2647.581 kb on + strand, within BWI76_RS12695at 2647.706 kb on + strandat 2647.840 kb on + strandat 2647.864 kb on + strandat 2647.872 kb on - strandat 2648.068 kb on + strand, within BWI76_RS12700at 2648.076 kb on - strand, within BWI76_RS12700at 2648.396 kb on + strand, within BWI76_RS12705at 2648.424 kb on - strand, within BWI76_RS12705at 2648.438 kb on - strand, within BWI76_RS12705at 2648.438 kb on - strand, within BWI76_RS12705at 2648.662 kb on + strand, within BWI76_RS12705at 2648.673 kb on + strand, within BWI76_RS12705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
remove
2,645,758 - -0.7
2,645,797 + +0.7
2,645,801 + -0.4
2,645,900 + BWI76_RS12690 0.15 +1.0
2,645,903 + BWI76_RS12690 0.16 -0.1
2,645,940 + BWI76_RS12690 0.22 +0.2
2,645,940 + BWI76_RS12690 0.22 -0.7
2,645,940 + BWI76_RS12690 0.22 +0.2
2,645,940 + BWI76_RS12690 0.22 -2.1
2,645,940 + BWI76_RS12690 0.22 +0.6
2,645,948 - BWI76_RS12690 0.23 -0.7
2,645,948 - BWI76_RS12690 0.23 -0.9
2,645,948 - BWI76_RS12690 0.23 +0.3
2,645,948 - BWI76_RS12690 0.23 +0.2
2,645,973 + BWI76_RS12690 0.27 +1.0
2,646,078 + BWI76_RS12690 0.44 -0.3
2,646,078 + BWI76_RS12690 0.44 +2.6
2,646,078 + BWI76_RS12690 0.44 +1.2
2,646,078 + BWI76_RS12690 0.44 -0.9
2,646,078 + BWI76_RS12690 0.44 -3.1
2,646,078 + BWI76_RS12690 0.44 +3.1
2,646,086 - BWI76_RS12690 0.46 +0.6
2,646,086 - BWI76_RS12690 0.46 +0.3
2,646,086 - BWI76_RS12690 0.46 -0.3
2,646,145 + BWI76_RS12690 0.56 -1.1
2,646,211 + BWI76_RS12690 0.66 +0.0
2,646,261 + BWI76_RS12690 0.75 -1.0
2,646,261 + BWI76_RS12690 0.75 -0.5
2,646,261 + BWI76_RS12690 0.75 -0.6
2,646,267 - BWI76_RS12690 0.76 +0.6
2,646,360 + +0.3
2,646,360 + +1.0
2,646,360 + +1.0
2,646,360 + -0.4
2,646,396 + -0.1
2,646,396 + +1.0
2,646,397 + -0.3
2,646,404 - -1.0
2,646,404 - -3.0
2,646,499 + -0.1
2,646,534 + +0.8
2,646,534 + +0.5
2,646,534 + -0.3
2,646,534 + +0.9
2,646,534 + -0.2
2,646,534 + +0.3
2,646,534 + +0.7
2,646,534 + -0.2
2,646,538 + +0.4
2,646,545 + +0.5
2,646,548 + -0.3
2,646,550 + +1.7
2,646,560 + +0.1
2,646,599 + -0.7
2,646,601 + -0.4
2,646,601 + +1.9
2,646,685 + +0.5
2,646,698 - -0.1
2,646,725 + -0.1
2,646,742 + -0.1
2,646,765 + +0.2
2,646,774 + -0.9
2,646,779 + +0.5
2,646,831 + +0.4
2,646,839 - +0.4
2,646,902 - BWI76_RS12695 0.15 -1.5
2,647,035 - BWI76_RS12695 0.28 -2.5
2,647,127 + BWI76_RS12695 0.38 -1.4
2,647,398 + BWI76_RS12695 0.65 -0.7
2,647,475 - BWI76_RS12695 0.73 +1.5
2,647,581 + BWI76_RS12695 0.84 -1.0
2,647,706 + -0.1
2,647,840 + +0.7
2,647,864 + +0.6
2,647,872 - +1.1
2,648,068 + BWI76_RS12700 0.19 +0.3
2,648,076 - BWI76_RS12700 0.22 +0.4
2,648,396 + BWI76_RS12705 0.13 -0.5
2,648,424 - BWI76_RS12705 0.15 +0.1
2,648,438 - BWI76_RS12705 0.16 +0.5
2,648,438 - BWI76_RS12705 0.16 -0.5
2,648,662 + BWI76_RS12705 0.32 +0.4
2,648,673 + BWI76_RS12705 0.33 -0.1

Or see this region's nucleotide sequence