Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12335

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12325 and BWI76_RS12330 overlap by 1 nucleotidesBWI76_RS12330 and BWI76_RS12335 overlap by 14 nucleotidesBWI76_RS12335 and BWI76_RS12340 are separated by 224 nucleotides BWI76_RS12325: BWI76_RS12325 - hypothetical protein, at 2,570,941 to 2,574,228 _RS12325 BWI76_RS12330: BWI76_RS12330 - hypothetical protein, at 2,574,228 to 2,574,701 _RS12330 BWI76_RS12335: BWI76_RS12335 - hypothetical protein, at 2,574,688 to 2,575,170 _RS12335 BWI76_RS12340: BWI76_RS12340 - molecular chaperone Tir, at 2,575,395 to 2,576,276 _RS12340 Position (kb) 2574 2575 2576Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2573.900 kb on - strandat 2574.018 kb on - strandat 2574.080 kb on + strandat 2574.081 kb on - strandat 2574.088 kb on - strandat 2574.088 kb on - strandat 2574.131 kb on - strandat 2574.145 kb on - strandat 2574.160 kb on + strandat 2574.247 kb on - strandat 2574.366 kb on - strand, within BWI76_RS12330at 2574.386 kb on - strand, within BWI76_RS12330at 2574.459 kb on + strand, within BWI76_RS12330at 2574.668 kb on + strandat 2574.668 kb on + strandat 2574.675 kb on - strandat 2574.722 kb on + strandat 2574.827 kb on + strand, within BWI76_RS12335at 2574.835 kb on - strand, within BWI76_RS12335at 2574.843 kb on - strand, within BWI76_RS12335at 2574.862 kb on - strand, within BWI76_RS12335at 2575.011 kb on - strandat 2575.034 kb on - strand, within BWI76_RS12335at 2575.034 kb on - strand, within BWI76_RS12335at 2575.075 kb on - strand, within BWI76_RS12335at 2575.087 kb on + strand, within BWI76_RS12335at 2575.087 kb on + strand, within BWI76_RS12335at 2575.091 kb on + strand, within BWI76_RS12335at 2575.091 kb on + strand, within BWI76_RS12335at 2575.095 kb on - strand, within BWI76_RS12335at 2575.095 kb on - strand, within BWI76_RS12335at 2575.099 kb on - strand, within BWI76_RS12335at 2575.099 kb on - strand, within BWI76_RS12335at 2575.099 kb on - strand, within BWI76_RS12335at 2575.099 kb on - strand, within BWI76_RS12335at 2575.115 kb on + strand, within BWI76_RS12335at 2575.119 kb on - strand, within BWI76_RS12335at 2575.125 kb on - strandat 2575.179 kb on + strandat 2575.186 kb on - strandat 2575.312 kb on + strandat 2575.322 kb on + strandat 2575.322 kb on + strandat 2575.322 kb on + strandat 2575.329 kb on + strandat 2575.329 kb on + strandat 2575.329 kb on + strandat 2575.329 kb on + strandat 2575.335 kb on + strandat 2575.335 kb on + strandat 2575.337 kb on - strandat 2575.355 kb on - strandat 2575.416 kb on - strandat 2575.424 kb on - strandat 2575.464 kb on - strandat 2575.585 kb on + strandat 2575.702 kb on + strandat 2575.758 kb on + strand, within BWI76_RS12340at 2575.860 kb on + strand, within BWI76_RS12340at 2575.861 kb on - strand, within BWI76_RS12340at 2576.142 kb on + strand, within BWI76_RS12340at 2576.166 kb on - strand, within BWI76_RS12340at 2576.168 kb on + strand, within BWI76_RS12340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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2,573,900 - +0.8
2,574,018 - +0.5
2,574,080 + +0.0
2,574,081 - +0.1
2,574,088 - -1.7
2,574,088 - -0.7
2,574,131 - +0.1
2,574,145 - -1.8
2,574,160 + +1.1
2,574,247 - +2.9
2,574,366 - BWI76_RS12330 0.29 -0.3
2,574,386 - BWI76_RS12330 0.33 -0.0
2,574,459 + BWI76_RS12330 0.49 -1.5
2,574,668 + -0.4
2,574,668 + -0.3
2,574,675 - +1.2
2,574,722 + +0.5
2,574,827 + BWI76_RS12335 0.29 -2.2
2,574,835 - BWI76_RS12335 0.30 -1.0
2,574,843 - BWI76_RS12335 0.32 -0.1
2,574,862 - BWI76_RS12335 0.36 +0.9
2,575,011 - -0.1
2,575,034 - BWI76_RS12335 0.72 -1.5
2,575,034 - BWI76_RS12335 0.72 -0.3
2,575,075 - BWI76_RS12335 0.80 +0.0
2,575,087 + BWI76_RS12335 0.83 +1.5
2,575,087 + BWI76_RS12335 0.83 -2.4
2,575,091 + BWI76_RS12335 0.83 -1.4
2,575,091 + BWI76_RS12335 0.83 -0.4
2,575,095 - BWI76_RS12335 0.84 +0.5
2,575,095 - BWI76_RS12335 0.84 +0.2
2,575,099 - BWI76_RS12335 0.85 -2.2
2,575,099 - BWI76_RS12335 0.85 -0.5
2,575,099 - BWI76_RS12335 0.85 -0.1
2,575,099 - BWI76_RS12335 0.85 +0.7
2,575,115 + BWI76_RS12335 0.88 -2.9
2,575,119 - BWI76_RS12335 0.89 -0.1
2,575,125 - -0.5
2,575,179 + -0.8
2,575,186 - -1.3
2,575,312 + -0.7
2,575,322 + +0.3
2,575,322 + +0.1
2,575,322 + +1.0
2,575,329 + -0.7
2,575,329 + -1.9
2,575,329 + -0.1
2,575,329 + +0.3
2,575,335 + -1.1
2,575,335 + -0.1
2,575,337 - +1.2
2,575,355 - -0.4
2,575,416 - -0.7
2,575,424 - +0.6
2,575,464 - -0.7
2,575,585 + +1.3
2,575,702 + +0.9
2,575,758 + BWI76_RS12340 0.41 -0.9
2,575,860 + BWI76_RS12340 0.53 +1.9
2,575,861 - BWI76_RS12340 0.53 +1.4
2,576,142 + BWI76_RS12340 0.85 +0.1
2,576,166 - BWI76_RS12340 0.87 +2.0
2,576,168 + BWI76_RS12340 0.88 -1.2

Or see this region's nucleotide sequence