Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12155

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12145 and BWI76_RS12150 are separated by 550 nucleotidesBWI76_RS12150 and BWI76_RS12155 are separated by 78 nucleotidesBWI76_RS12155 and BWI76_RS12160 are separated by 57 nucleotidesBWI76_RS12160 and BWI76_RS12165 overlap by 1 nucleotidesBWI76_RS12165 and BWI76_RS12170 are separated by 2 nucleotides BWI76_RS12145: BWI76_RS12145 - hypothetical protein, at 2,546,659 to 2,547,765 _RS12145 BWI76_RS12150: BWI76_RS12150 - DNA damage-inducible protein I, at 2,548,316 to 2,548,549 _RS12150 BWI76_RS12155: BWI76_RS12155 - hypothetical protein, at 2,548,628 to 2,548,849 _RS12155 BWI76_RS12160: BWI76_RS12160 - hypothetical protein, at 2,548,907 to 2,549,506 _RS12160 BWI76_RS12165: BWI76_RS12165 - hypothetical protein, at 2,549,506 to 2,549,712 _RS12165 BWI76_RS12170: BWI76_RS12170 - hypothetical protein, at 2,549,715 to 2,550,011 _RS12170 Position (kb) 2548 2549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2547.788 kb on + strandat 2547.875 kb on + strandat 2547.879 kb on + strandat 2547.883 kb on + strandat 2547.884 kb on + strandat 2547.902 kb on - strandat 2547.909 kb on + strandat 2547.909 kb on + strandat 2547.909 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.920 kb on + strandat 2547.928 kb on - strandat 2547.928 kb on - strandat 2547.928 kb on - strandat 2547.928 kb on - strandat 2547.928 kb on - strandat 2547.928 kb on - strandat 2547.944 kb on + strandat 2547.959 kb on - strandat 2547.963 kb on - strandat 2547.969 kb on + strandat 2547.972 kb on + strandat 2547.977 kb on + strandat 2547.977 kb on + strandat 2547.977 kb on + strandat 2547.977 kb on + strandat 2547.977 kb on + strandat 2547.980 kb on - strandat 2547.985 kb on - strandat 2547.985 kb on - strandat 2547.990 kb on + strandat 2548.004 kb on - strandat 2548.004 kb on - strandat 2548.145 kb on + strandat 2548.145 kb on + strandat 2548.153 kb on - strandat 2548.306 kb on + strandat 2548.362 kb on + strand, within BWI76_RS12150at 2548.373 kb on + strand, within BWI76_RS12150at 2548.456 kb on + strand, within BWI76_RS12150at 2548.457 kb on - strand, within BWI76_RS12150at 2548.464 kb on - strand, within BWI76_RS12150at 2548.471 kb on - strand, within BWI76_RS12150at 2548.587 kb on + strandat 2548.608 kb on - strandat 2548.687 kb on - strand, within BWI76_RS12155at 2548.687 kb on - strand, within BWI76_RS12155at 2548.801 kb on + strand, within BWI76_RS12155at 2548.801 kb on + strand, within BWI76_RS12155at 2548.878 kb on + strandat 2548.890 kb on + strandat 2548.898 kb on + strandat 2548.925 kb on - strandat 2548.934 kb on - strandat 2548.944 kb on - strandat 2548.956 kb on + strandat 2548.969 kb on - strand, within BWI76_RS12160at 2548.969 kb on - strand, within BWI76_RS12160at 2548.970 kb on - strand, within BWI76_RS12160at 2549.023 kb on + strand, within BWI76_RS12160at 2549.023 kb on + strand, within BWI76_RS12160at 2549.023 kb on + strand, within BWI76_RS12160at 2549.031 kb on - strand, within BWI76_RS12160at 2549.133 kb on + strand, within BWI76_RS12160at 2549.134 kb on + strand, within BWI76_RS12160at 2549.313 kb on - strand, within BWI76_RS12160at 2549.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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2,547,788 + -0.9
2,547,875 + +0.5
2,547,879 + -0.3
2,547,883 + +0.3
2,547,884 + +2.2
2,547,902 - -1.1
2,547,909 + +0.9
2,547,909 + +0.0
2,547,909 + -1.5
2,547,920 + -0.7
2,547,920 + +0.2
2,547,920 + -0.4
2,547,920 + +0.0
2,547,920 + +0.8
2,547,920 + -0.2
2,547,920 + -1.2
2,547,920 + -0.5
2,547,920 + +1.8
2,547,920 + +1.3
2,547,920 + +0.4
2,547,920 + -0.1
2,547,920 + +0.5
2,547,920 + -1.1
2,547,920 + -1.8
2,547,928 - -0.1
2,547,928 - -1.4
2,547,928 - -0.7
2,547,928 - +0.3
2,547,928 - +0.1
2,547,928 - -2.2
2,547,944 + -0.3
2,547,959 - +1.2
2,547,963 - +1.1
2,547,969 + -0.3
2,547,972 + -0.8
2,547,977 + -3.4
2,547,977 + +1.0
2,547,977 + -0.1
2,547,977 + +0.0
2,547,977 + +0.4
2,547,980 - -1.1
2,547,985 - -0.5
2,547,985 - +1.6
2,547,990 + -0.3
2,548,004 - -0.5
2,548,004 - +0.0
2,548,145 + +0.0
2,548,145 + +0.1
2,548,153 - -3.4
2,548,306 + +0.5
2,548,362 + BWI76_RS12150 0.20 +0.7
2,548,373 + BWI76_RS12150 0.24 -2.6
2,548,456 + BWI76_RS12150 0.60 +0.3
2,548,457 - BWI76_RS12150 0.60 -1.5
2,548,464 - BWI76_RS12150 0.63 +1.1
2,548,471 - BWI76_RS12150 0.66 -1.2
2,548,587 + -1.0
2,548,608 - +0.3
2,548,687 - BWI76_RS12155 0.27 +1.9
2,548,687 - BWI76_RS12155 0.27 -0.8
2,548,801 + BWI76_RS12155 0.78 -1.3
2,548,801 + BWI76_RS12155 0.78 -0.6
2,548,878 + +0.6
2,548,890 + -1.2
2,548,898 + +0.8
2,548,925 - +0.2
2,548,934 - +0.4
2,548,944 - +0.0
2,548,956 + -0.7
2,548,969 - BWI76_RS12160 0.10 +0.7
2,548,969 - BWI76_RS12160 0.10 -0.0
2,548,970 - BWI76_RS12160 0.10 +0.2
2,549,023 + BWI76_RS12160 0.19 -0.7
2,549,023 + BWI76_RS12160 0.19 -0.2
2,549,023 + BWI76_RS12160 0.19 +0.8
2,549,031 - BWI76_RS12160 0.21 -1.8
2,549,133 + BWI76_RS12160 0.38 -0.7
2,549,134 + BWI76_RS12160 0.38 -2.0
2,549,313 - BWI76_RS12160 0.68 +0.1
2,549,452 - +0.3

Or see this region's nucleotide sequence