Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11845

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11835 and BWI76_RS11840 are separated by 32 nucleotidesBWI76_RS11840 and BWI76_RS11845 overlap by 1 nucleotidesBWI76_RS11845 and BWI76_RS11850 are separated by 9 nucleotides BWI76_RS11835: BWI76_RS11835 - putative regulatory protein MarR, at 2,488,472 to 2,488,927 _RS11835 BWI76_RS11840: BWI76_RS11840 - tryptophan synthase subunit alpha, at 2,488,960 to 2,489,769 _RS11840 BWI76_RS11845: BWI76_RS11845 - tryptophan synthase subunit beta, at 2,489,769 to 2,490,962 _RS11845 BWI76_RS11850: BWI76_RS11850 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase, at 2,490,972 to 2,492,330 _RS11850 Position (kb) 2489 2490 2491Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2488.873 kb on - strand, within BWI76_RS11835at 2489.110 kb on + strand, within BWI76_RS11840at 2489.118 kb on - strand, within BWI76_RS11840at 2489.335 kb on - strand, within BWI76_RS11840at 2489.732 kb on + strandat 2489.811 kb on + strandat 2490.020 kb on - strand, within BWI76_RS11845at 2490.126 kb on + strand, within BWI76_RS11845at 2490.913 kb on + strandat 2490.932 kb on + strandat 2490.937 kb on + strandat 2490.955 kb on + strandat 2491.046 kb on - strandat 2491.136 kb on + strand, within BWI76_RS11850at 2491.136 kb on + strand, within BWI76_RS11850at 2491.324 kb on - strand, within BWI76_RS11850at 2491.426 kb on - strand, within BWI76_RS11850at 2491.542 kb on + strand, within BWI76_RS11850at 2491.601 kb on - strand, within BWI76_RS11850at 2491.672 kb on - strand, within BWI76_RS11850at 2491.712 kb on - strand, within BWI76_RS11850at 2491.732 kb on - strand, within BWI76_RS11850at 2491.855 kb on + strand, within BWI76_RS11850

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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2,488,873 - BWI76_RS11835 0.88 -0.8
2,489,110 + BWI76_RS11840 0.19 -1.6
2,489,118 - BWI76_RS11840 0.20 -4.4
2,489,335 - BWI76_RS11840 0.46 -1.1
2,489,732 + -4.6
2,489,811 + -3.8
2,490,020 - BWI76_RS11845 0.21 -1.1
2,490,126 + BWI76_RS11845 0.30 -6.2
2,490,913 + -3.6
2,490,932 + -3.6
2,490,937 + -5.6
2,490,955 + -2.1
2,491,046 - -1.7
2,491,136 + BWI76_RS11850 0.12 -6.2
2,491,136 + BWI76_RS11850 0.12 -5.9
2,491,324 - BWI76_RS11850 0.26 -5.0
2,491,426 - BWI76_RS11850 0.33 -5.0
2,491,542 + BWI76_RS11850 0.42 -3.9
2,491,601 - BWI76_RS11850 0.46 -3.0
2,491,672 - BWI76_RS11850 0.52 -3.1
2,491,712 - BWI76_RS11850 0.54 -2.7
2,491,732 - BWI76_RS11850 0.56 -2.2
2,491,855 + BWI76_RS11850 0.65 -4.3

Or see this region's nucleotide sequence