Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11840

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11830 and BWI76_RS11835 are separated by 77 nucleotidesBWI76_RS11835 and BWI76_RS11840 are separated by 32 nucleotidesBWI76_RS11840 and BWI76_RS11845 overlap by 1 nucleotides BWI76_RS11830: BWI76_RS11830 - hypothetical protein, at 2,487,447 to 2,488,394 _RS11830 BWI76_RS11835: BWI76_RS11835 - putative regulatory protein MarR, at 2,488,472 to 2,488,927 _RS11835 BWI76_RS11840: BWI76_RS11840 - tryptophan synthase subunit alpha, at 2,488,960 to 2,489,769 _RS11840 BWI76_RS11845: BWI76_RS11845 - tryptophan synthase subunit beta, at 2,489,769 to 2,490,962 _RS11845 Position (kb) 2488 2489 2490Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2487.964 kb on + strand, within BWI76_RS11830at 2488.110 kb on + strand, within BWI76_RS11830at 2488.133 kb on + strand, within BWI76_RS11830at 2488.242 kb on + strand, within BWI76_RS11830at 2488.718 kb on + strand, within BWI76_RS11835at 2488.873 kb on - strand, within BWI76_RS11835at 2489.110 kb on + strand, within BWI76_RS11840at 2489.118 kb on - strand, within BWI76_RS11840at 2489.335 kb on - strand, within BWI76_RS11840at 2489.732 kb on + strandat 2489.811 kb on + strandat 2490.020 kb on - strand, within BWI76_RS11845at 2490.126 kb on + strand, within BWI76_RS11845

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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2,487,964 + BWI76_RS11830 0.55 +0.3
2,488,110 + BWI76_RS11830 0.70 -0.5
2,488,133 + BWI76_RS11830 0.72 +0.2
2,488,242 + BWI76_RS11830 0.84 +0.5
2,488,718 + BWI76_RS11835 0.54 +0.2
2,488,873 - BWI76_RS11835 0.88 -0.8
2,489,110 + BWI76_RS11840 0.19 -1.6
2,489,118 - BWI76_RS11840 0.20 -4.4
2,489,335 - BWI76_RS11840 0.46 -1.1
2,489,732 + -4.6
2,489,811 + -3.8
2,490,020 - BWI76_RS11845 0.21 -1.1
2,490,126 + BWI76_RS11845 0.30 -6.2

Or see this region's nucleotide sequence