Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05640

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05635 and BWI76_RS05640 are separated by 154 nucleotidesBWI76_RS05640 and BWI76_RS05645 are separated by 136 nucleotides BWI76_RS05635: BWI76_RS05635 - AraC family transcriptional regulator, at 1,182,783 to 1,183,775 _RS05635 BWI76_RS05640: BWI76_RS05640 - GntR family transcriptional regulator, at 1,183,930 to 1,184,706 _RS05640 BWI76_RS05645: BWI76_RS05645 - fructuronate reductase, at 1,184,843 to 1,186,318 _RS05645 Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -2 -1 0 1 2at 1182.971 kb on - strand, within BWI76_RS05635at 1183.036 kb on - strand, within BWI76_RS05635at 1183.148 kb on + strand, within BWI76_RS05635at 1183.228 kb on - strand, within BWI76_RS05635at 1183.559 kb on - strand, within BWI76_RS05635at 1183.592 kb on + strand, within BWI76_RS05635at 1183.689 kb on - strandat 1184.124 kb on - strand, within BWI76_RS05640at 1184.124 kb on - strand, within BWI76_RS05640at 1184.205 kb on + strand, within BWI76_RS05640at 1185.229 kb on + strand, within BWI76_RS05645at 1185.264 kb on + strand, within BWI76_RS05645at 1185.272 kb on - strand, within BWI76_RS05645

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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1,182,971 - BWI76_RS05635 0.19 +0.6
1,183,036 - BWI76_RS05635 0.25 -0.4
1,183,148 + BWI76_RS05635 0.37 +0.5
1,183,228 - BWI76_RS05635 0.45 +1.4
1,183,559 - BWI76_RS05635 0.78 -0.1
1,183,592 + BWI76_RS05635 0.81 -1.2
1,183,689 - -1.9
1,184,124 - BWI76_RS05640 0.25 -1.0
1,184,124 - BWI76_RS05640 0.25 -2.6
1,184,205 + BWI76_RS05640 0.35 -1.1
1,185,229 + BWI76_RS05645 0.26 +1.8
1,185,264 + BWI76_RS05645 0.29 +0.2
1,185,272 - BWI76_RS05645 0.29 -0.3

Or see this region's nucleotide sequence