Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20430

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
2,405,095	-				-0.0
2,405,097	-				+1.0
2,405,101	+				-1.4
2,405,115	+				-0.7
2,405,115	+				-0.4
2,405,127	+				-0.9
2,405,157	+				-0.2
2,405,157	+				+0.3
2,405,162	+				-0.0
2,405,162	+				-0.4
2,405,165	-				-1.4
2,406,018	-				-1.1
2,406,018	-				+0.5
2,406,023	+				-0.7
2,406,039	-				-1.2
2,406,053	-				+0.1
2,406,053	-				-1.0
2,406,053	-				-0.2
2,406,055	+				+0.0
2,406,058	-				-0.3
2,406,069	-				-1.1
2,406,072	+				-0.6
2,406,082	-				+0.5
2,406,086	+				+0.2
2,406,086	+				-0.3
2,406,090	-				-1.1
2,406,090	-				+0.5
2,406,124	+				+2.5
2,406,125	+				+0.5
2,406,141	+				+1.5
2,406,164	+		BBR_RS20430	0.12	-0.8
2,406,177	-		BBR_RS20430	0.14	+2.5
2,406,195	-		BBR_RS20430	0.17	+2.5
2,406,221	+		BBR_RS20430	0.21	+2.5
2,406,255	+		BBR_RS20430	0.26	+2.5
2,406,288	+		BBR_RS20430	0.31	+2.5
2,406,310	-		BBR_RS20430	0.35	+1.5
2,406,333	+		BBR_RS20430	0.39	+0.9
2,406,386	+		BBR_RS20430	0.47	+2.5
2,406,394	-		BBR_RS20430	0.48	+2.5
2,406,494	+		BBR_RS20430	0.64	+2.5
2,406,502	-		BBR_RS20430	0.65	+1.5
2,406,502	-		BBR_RS20430	0.65	+0.9
2,406,578	-		BBR_RS20430	0.77	+2.5
2,406,582	+		BBR_RS20430	0.78	+2.5
2,406,600	+		BBR_RS20430	0.81	+1.5
2,406,650	+		BBR_RS20430	0.89	-1.0
2,406,658	-				-0.9
2,406,658	-				-0.1
2,406,700	+				-0.1
2,406,701	+				-0.6
2,406,701	+				-0.5
2,406,703	-				-1.3
2,406,703	-				+0.1
2,406,708	-				-0.4
2,406,708	-				-0.3
2,406,708	-				-1.2
2,406,709	-				-0.3
2,406,711	+				-0.9
2,406,714	+				-0.3
2,406,726	-				-0.0
2,406,739	+				-0.3
2,406,739	+				-0.1
2,406,739	+				-0.9
2,406,747	-				+0.6
2,406,747	-				+0.5
2,406,747	-				+0.2
2,406,747	-				-0.1
2,406,749	+				+0.2
2,406,749	+				+1.2
2,406,757	-				-0.4
2,406,757	-				-1.0
2,406,757	-				+0.3
2,406,765	+				-0.3
2,406,767	-				-0.1
2,406,777	-				-0.4
2,406,793	+				-0.1
2,406,793	+				-1.3
2,406,793	+				-0.1
2,406,793	+				-0.2
2,406,793	+				+0.5
2,406,797	+				-0.9
2,406,799	+				-0.5
2,406,799	+				-0.7
2,406,799	+				+0.2
2,406,799	+				-0.0
2,406,799	+				-0.1
2,406,799	+				-0.1
2,406,799	+				+0.1
2,406,799	+				+0.7
2,406,801	-				-0.4
2,406,801	-				-0.5
2,406,801	-				+0.5
2,406,807	-				-0.7
2,406,807	-				+0.7
2,406,807	-				-0.4
2,406,807	-				+0.1
2,406,807	-				-0.5
2,406,807	-				-0.6
2,406,807	-				-0.4
2,406,807	-				-0.6
2,406,807	-				+1.0
2,406,812	+				-0.1
2,406,815	-				-0.0
2,406,815	-				+0.1
2,406,815	-				-0.5
2,406,815	-				+0.4
2,406,815	-				+0.1
2,406,817	+				+0.6
2,406,817	+				-0.2
2,406,820	+				+0.9
2,406,825	-				-0.4
2,406,825	-				+1.1
2,406,838	+				-1.4
2,406,841	-				+0.6
2,406,846	-				-0.3
2,406,846	-				-0.1
2,406,846	-				-0.3
2,406,846	-				-0.3
2,406,864	+				+0.6
2,407,189	+		BBR_RS20435	0.24	-0.6