Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19395

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
2,133,682	-		BBR_RS19390	0.33	-0.3
2,133,822	-		BBR_RS19390	0.48	+0.8
2,134,020	+		BBR_RS19390	0.70	+0.8
2,134,020	+		BBR_RS19390	0.70	-0.4
2,134,020	+		BBR_RS19390	0.70	-0.0
2,134,204	+				-2.3
2,134,217	+				-0.5
2,134,235	-				-0.2
2,134,239	+				+0.4
2,134,247	-				+0.1
2,134,285	+				-0.4
2,134,285	+				+0.1
2,134,285	+				+0.0
2,134,290	+				+0.4
2,134,295	+				+0.3
2,134,295	+				+0.6
2,134,364	+				+0.4
2,134,366	+				-0.5
2,134,395	+				-0.3
2,134,395	+				+0.6
2,134,395	+				-0.3
2,134,403	-				-0.1
2,134,403	-				-0.7
2,134,426	-				+0.5
2,134,460	+				-0.6
2,134,479	+				+0.9
2,134,481	+				-0.2
2,134,494	-				-0.1
2,134,494	-				+0.0
2,134,495	+				-0.3
2,134,495	+				+0.0
2,134,502	+				-0.5
2,134,502	+				-0.6
2,134,503	-				-0.5
2,134,503	-				-0.1
2,134,503	-				+0.1
2,134,513	+				-0.1
2,134,513	+				-1.2
2,134,523	+				-0.2
2,134,523	+				+0.2
2,134,531	-				-0.4
2,134,609	+				+0.4
2,134,626	-				-2.5
2,134,626	-				-2.2
2,134,864	+		BBR_RS19395	0.16	-0.1
2,134,902	-		BBR_RS19395	0.18	+0.1
2,134,931	+		BBR_RS19395	0.19	-0.8
2,136,544	+				-1.2
2,136,595	+				-0.1
2,136,595	+				-0.3
2,136,610	+				-1.0
2,136,620	-				+0.5
2,136,649	+				+0.1
2,136,676	-				-0.6
2,136,676	-				-0.8
2,136,676	-				-1.3
2,136,693	+				+0.0
2,136,694	+				+0.4
2,136,694	+				-0.6
2,136,701	-				+0.5
2,136,701	-				-0.9
2,136,703	+				+0.7
2,136,711	-				+0.3
2,136,801	+		BBR_RS19400	0.11	+0.4
2,137,352	-		BBR_RS19400	0.75	+1.2
2,137,570	-				-0.5
2,137,570	-				-0.4
2,137,586	+				+0.3
2,137,586	+				+0.6
2,137,586	+				-0.1
2,137,586	+				-0.4
2,137,594	-				-0.4
2,137,609	-				+0.4
2,137,611	-				+0.4
2,137,611	-				-0.4
2,137,611	-				+0.6
2,137,617	+				-0.6