Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19160

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
2,072,069	-				-0.6
2,072,069	-				+0.3
2,072,116	-				+0.6
2,072,170	-		BBR_RS19155	0.13	+0.2
2,072,219	-		BBR_RS19155	0.18	-0.3
2,072,232	-		BBR_RS19155	0.20	-0.9
2,072,245	-		BBR_RS19155	0.21	+1.2
2,072,282	-		BBR_RS19155	0.25	-0.1
2,072,294	-		BBR_RS19155	0.26	-0.2
2,072,296	-		BBR_RS19155	0.26	-0.4
2,072,335	-		BBR_RS19155	0.30	-0.3
2,072,335	-		BBR_RS19155	0.30	-0.4
2,072,340	-		BBR_RS19155	0.30	-1.1
2,072,348	-		BBR_RS19155	0.31	-0.1
2,072,362	-		BBR_RS19155	0.33	+1.0
2,072,384	-		BBR_RS19155	0.35	-0.8
2,072,419	-		BBR_RS19155	0.38	+0.0
2,072,419	-		BBR_RS19155	0.38	-0.8
2,072,429	-		BBR_RS19155	0.39	-1.3
2,072,473	-		BBR_RS19155	0.44	+0.3
2,072,666	-		BBR_RS19155	0.63	-0.5
2,072,678	-		BBR_RS19155	0.64	-1.7
2,072,678	-		BBR_RS19155	0.64	-1.4
2,072,683	-		BBR_RS19155	0.65	-0.1
2,072,683	-		BBR_RS19155	0.65	-0.7
2,072,697	-		BBR_RS19155	0.66	+1.9
2,072,702	-		BBR_RS19155	0.67	+0.0
2,072,707	-		BBR_RS19155	0.67	-0.5
2,072,723	-		BBR_RS19155	0.69	-0.7
2,072,727	-		BBR_RS19155	0.69	-0.3
2,072,749	-		BBR_RS19155	0.71	-0.1
2,072,749	-		BBR_RS19155	0.71	-0.1
2,072,749	-		BBR_RS19155	0.71	+0.5
2,072,761	-		BBR_RS19155	0.73	+0.5
2,072,784	-		BBR_RS19155	0.75	-1.7
2,072,793	-		BBR_RS19155	0.76	-0.8
2,072,880	-		BBR_RS19155	0.84	-1.4
2,072,926	-		BBR_RS19155	0.89	-1.0
2,072,926	-		BBR_RS19155	0.89	-0.4
2,072,939	-				+0.4
2,072,947	-				-0.4
2,073,025	-				-0.4
2,073,030	-				+0.5
2,073,042	-				-0.0
2,073,043	+				+0.5
2,073,066	-				-0.7
2,073,066	-				-0.9
2,073,086	-				-0.0
2,073,086	-				+0.6
2,073,086	-				-0.2
2,073,086	-				-0.9
2,073,118	-				-1.4
2,073,152	-		BBR_RS19160	0.12	-1.5
2,073,871	-		BBR_RS19160	0.88	-1.2
2,073,928	-				-0.7
2,073,928	-				+0.8
2,073,928	-				+0.8
2,074,007	-				+0.3
2,074,009	+				+0.7
2,074,033	+				+0.7
2,074,066	+				+0.1
2,074,066	+				+0.1
2,074,088	+				-0.2
2,074,088	+				-0.4
2,074,088	+				+0.4
2,074,088	-				-0.0
2,074,096	-				-0.0
2,074,096	-				+0.2
2,074,096	-				+0.4
2,074,108	+				-0.5
2,074,108	-				+1.4
2,074,116	-				-0.2
2,074,152	-				+0.8
2,074,152	-				+0.5
2,074,158	+				+0.1
2,074,164	-				+0.1
2,074,166	-				-0.2
2,074,169	+				-0.9
2,074,169	+				+0.8
2,074,169	+				+0.8
2,074,169	+				+0.9
2,074,169	+				+0.2
2,074,177	-				+0.4
2,074,177	-				+0.4
2,074,177	-				+0.4
2,074,200	+				+0.3
2,074,201	+				-0.6
2,074,201	+				+0.4
2,074,209	-				+0.8
2,074,236	+				-0.9
2,074,238	+				+0.6
2,074,238	+				+0.3
2,074,244	-				-0.5
2,074,246	-				-0.1
2,074,246	-				-0.0
2,074,248	+				+0.3
2,074,256	-				-0.5
2,074,284	+				+2.7
2,074,290	-				-0.1
2,074,292	-				+0.3
2,074,313	-		BBR_RS19165	0.11	-0.2
2,074,319	-		BBR_RS19165	0.11	+0.6
2,074,319	-		BBR_RS19165	0.11	-0.3
2,074,323	-		BBR_RS19165	0.11	-0.7
2,074,632	-		BBR_RS19165	0.39	-1.7