Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18725

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,990,724	+		BBR_RS18720	0.37	-0.2
1,990,727	-		BBR_RS18720	0.38	+0.3
1,990,732	-		BBR_RS18720	0.38	+0.3
1,990,733	+		BBR_RS18720	0.38	+0.9
1,990,770	-		BBR_RS18720	0.40	-0.2
1,990,772	+		BBR_RS18720	0.41	-0.8
1,990,784	+		BBR_RS18720	0.41	+0.6
1,990,784	+		BBR_RS18720	0.41	+0.1
1,990,789	+		BBR_RS18720	0.42	+0.5
1,990,792	-		BBR_RS18720	0.42	+0.0
1,990,792	-		BBR_RS18720	0.42	-0.5
1,990,792	-		BBR_RS18720	0.42	-0.3
1,990,817	+		BBR_RS18720	0.44	+0.1
1,990,847	+		BBR_RS18720	0.46	+0.5
1,990,857	-		BBR_RS18720	0.46	+0.2
1,990,857	-		BBR_RS18720	0.46	+0.3
1,990,863	-		BBR_RS18720	0.47	-1.5
1,990,891	-		BBR_RS18720	0.48	+1.0
1,990,912	+		BBR_RS18720	0.50	-0.3
1,990,933	-		BBR_RS18720	0.51	+0.2
1,990,940	+		BBR_RS18720	0.52	-0.2
1,990,945	+		BBR_RS18720	0.52	+1.4
1,990,957	+		BBR_RS18720	0.53	+0.5
1,990,965	-		BBR_RS18720	0.53	-0.2
1,990,970	-		BBR_RS18720	0.54	-0.7
1,990,995	+		BBR_RS18720	0.55	+0.0
1,991,000	+		BBR_RS18720	0.56	+0.4
1,991,019	+		BBR_RS18720	0.57	+0.3
1,991,022	-		BBR_RS18720	0.57	+0.8
1,991,022	-		BBR_RS18720	0.57	+0.4
1,991,029	+		BBR_RS18720	0.58	+0.0
1,991,032	-		BBR_RS18720	0.58	-0.1
1,991,040	-		BBR_RS18720	0.58	+0.2
1,991,049	+		BBR_RS18720	0.59	+0.9
1,991,049	+		BBR_RS18720	0.59	+0.4
1,991,049	-		BBR_RS18720	0.59	+0.0
1,991,052	-		BBR_RS18720	0.59	+0.3
1,991,060	+		BBR_RS18720	0.60	+0.4
1,991,101	-		BBR_RS18720	0.62	+0.7
1,991,101	-		BBR_RS18720	0.62	+0.0
1,991,121	-		BBR_RS18720	0.64	+0.5
1,991,142	+		BBR_RS18720	0.65	+0.1
1,991,150	-		BBR_RS18720	0.66	-0.5
1,991,150	-		BBR_RS18720	0.66	+0.6
1,991,150	-		BBR_RS18720	0.66	-1.3
1,991,161	-		BBR_RS18720	0.66	+0.5
1,991,180	+		BBR_RS18720	0.68	+0.2
1,991,188	+		BBR_RS18720	0.68	-1.4
1,991,196	-		BBR_RS18720	0.69	+0.4
1,991,203	+		BBR_RS18720	0.69	-0.2
1,991,209	-		BBR_RS18720	0.70	+0.6
1,991,221	-		BBR_RS18720	0.70	-0.3
1,991,230	+		BBR_RS18720	0.71	+0.5
1,991,232	+		BBR_RS18720	0.71	-0.4
1,991,232	-		BBR_RS18720	0.71	-0.3
1,991,246	+		BBR_RS18720	0.72	-0.9
1,991,269	-		BBR_RS18720	0.73	+0.4
1,991,269	-		BBR_RS18720	0.73	+0.7
1,991,271	-		BBR_RS18720	0.74	+1.0
1,991,280	+		BBR_RS18720	0.74	-0.2
1,991,285	+		BBR_RS18720	0.75	-1.3
1,991,303	-		BBR_RS18720	0.76	-0.3
1,991,303	-		BBR_RS18720	0.76	+0.4
1,991,305	+		BBR_RS18720	0.76	+0.2
1,991,305	+		BBR_RS18720	0.76	-0.3
1,991,313	-		BBR_RS18720	0.76	+0.6
1,991,313	-		BBR_RS18720	0.76	-0.3
1,991,313	-		BBR_RS18720	0.76	-0.1
1,991,313	-		BBR_RS18720	0.76	+0.3
1,991,313	-		BBR_RS18720	0.76	+0.5
1,991,343	+		BBR_RS18720	0.78	+0.0
1,991,346	-		BBR_RS18720	0.79	-0.0
1,991,346	-		BBR_RS18720	0.79	+0.4
1,991,361	-		BBR_RS18720	0.80	+0.1
1,991,364	+		BBR_RS18720	0.80	+0.2
1,991,370	-		BBR_RS18720	0.80	-0.3
1,991,372	-		BBR_RS18720	0.80	+0.4
1,991,418	-		BBR_RS18720	0.83	-0.3
1,991,418	-		BBR_RS18720	0.83	+0.0
1,991,477	+		BBR_RS18720	0.87	+0.9
1,991,523	+				-0.0
1,991,523	+				+0.1
1,991,523	-				-0.4
1,991,523	-				+0.0
1,991,531	-				+0.1
1,991,531	-				+0.3
1,991,533	-				-0.7
1,991,536	-				+0.5
1,991,565	-				+0.1
1,991,596	+				+0.6
1,991,596	+				+1.1
1,991,599	-				-0.5
1,991,604	-				+0.3
1,991,604	-				-0.3
1,991,627	+				+0.5
1,991,645	+				-0.0
1,991,645	+				+0.7
1,991,653	-				+0.5
1,991,656	+				+0.2
1,991,685	+				-0.0
1,991,702	-				-0.1
1,991,702	-				-0.8
1,991,702	-				+0.8
1,991,712	-				+0.5
1,991,721	-				+0.5
1,992,290	+		BBR_RS18725	0.52	+0.8
1,992,312	+		BBR_RS18725	0.54	-0.9
1,992,317	+		BBR_RS18725	0.54	+2.4
1,992,351	-		BBR_RS18725	0.57	+1.2
1,992,384	-		BBR_RS18725	0.60	-0.7
1,992,429	+		BBR_RS18725	0.64	+0.2
1,992,429	+		BBR_RS18725	0.64	-0.4
1,992,481	-		BBR_RS18725	0.69	-1.2
1,992,614	-		BBR_RS18725	0.81	-2.2
1,992,823	-				+0.5
1,992,884	+				-0.1
1,992,884	+				+0.3
1,992,886	+				-1.1
1,992,891	+				-0.1
1,992,892	+				+0.6
1,992,892	+				-0.4
1,992,892	-				-0.4
1,992,895	-				+0.7
1,992,899	+				+0.2
1,992,900	-				+0.3
1,992,900	-				-0.9
1,992,915	-				-0.1
1,992,915	-				-0.3
1,992,915	-				-0.5
1,993,626	-				-0.8
1,993,636	+				+0.3
1,993,644	+				+0.8
1,993,676	-				-0.9
1,993,710	+				+0.2
1,993,710	-				-0.1
1,993,710	-				-0.2
1,993,718	-				-0.8
1,993,748	-				+0.7
1,993,765	-				+0.4
1,993,766	-				-0.3
1,993,795	-				+0.3