Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18700

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,982,452	+				-4.1
1,982,589	-		BBR_RS18695	0.22	-3.5
1,982,615	+		BBR_RS18695	0.25	-1.8
1,982,623	-		BBR_RS18695	0.26	-2.6
1,982,828	+		BBR_RS18695	0.49	-3.1
1,982,838	+		BBR_RS18695	0.50	-3.3
1,982,882	+		BBR_RS18695	0.55	-2.6
1,982,911	-		BBR_RS18695	0.58	-1.8
1,982,981	-		BBR_RS18695	0.66	-1.8
1,983,030	+		BBR_RS18695	0.71	-1.3
1,983,130	+		BBR_RS18695	0.83	-2.9
1,983,131	-		BBR_RS18695	0.83	-1.9
1,983,138	-		BBR_RS18695	0.83	-1.2
1,983,143	-		BBR_RS18695	0.84	-1.3
1,983,191	+		BBR_RS18695	0.89	-3.4
1,983,327	-				-0.1
1,983,327	-				-0.3
1,983,335	-				+0.4
1,983,338	-				+0.2
1,983,357	-				-0.3
1,983,418	+				-2.4
1,983,479	+				-5.0
1,983,493	-				-0.6
1,983,523	-				-1.7
1,983,523	-				-1.5
1,983,660	-		BBR_RS18700	0.15	-0.9
1,983,700	-		BBR_RS18700	0.17	-0.7
1,983,710	-		BBR_RS18700	0.18	-0.6
1,983,741	+		BBR_RS18700	0.19	-0.9
1,983,741	+		BBR_RS18700	0.19	-1.6
1,983,749	-		BBR_RS18700	0.20	-0.5
1,983,749	-		BBR_RS18700	0.20	-0.7
1,983,880	-		BBR_RS18700	0.26	-0.9
1,983,906	-		BBR_RS18700	0.27	-0.6
1,984,157	-		BBR_RS18700	0.39	-5.0
1,984,194	+		BBR_RS18700	0.41	-4.0
1,984,364	+		BBR_RS18700	0.49	-3.1
1,984,402	+		BBR_RS18700	0.51	-3.9
1,984,402	+		BBR_RS18700	0.51	-1.7
1,984,407	+		BBR_RS18700	0.51	-4.9
1,984,456	+		BBR_RS18700	0.54	-4.9
1,984,496	-		BBR_RS18700	0.55	-4.1
1,984,635	-		BBR_RS18700	0.62	-3.3
1,984,679	-		BBR_RS18700	0.64	-4.5
1,984,711	+		BBR_RS18700	0.66	-4.3
1,984,730	+		BBR_RS18700	0.67	-3.4
1,984,786	-		BBR_RS18700	0.69	-4.4
1,984,792	-		BBR_RS18700	0.70	-3.0
1,984,830	-		BBR_RS18700	0.71	-0.2
1,984,861	-		BBR_RS18700	0.73	-3.5
1,984,986	+		BBR_RS18700	0.79	-4.3
1,984,993	-		BBR_RS18700	0.79	-4.7
1,985,037	+		BBR_RS18700	0.81	-2.8
1,985,122	-		BBR_RS18700	0.85	-3.6
1,985,122	-		BBR_RS18700	0.85	-4.7
1,985,122	-		BBR_RS18700	0.85	-3.9
1,985,147	-		BBR_RS18700	0.87	-4.3
1,985,205	+		BBR_RS18700	0.89	-3.7
1,985,235	+				-4.4
1,985,249	-				-4.7
1,985,326	-				-5.4
1,985,382	+				-1.7
1,985,425	-				-0.7
1,985,451	+				-1.2
1,985,456	+				-0.8
1,985,456	+				-1.0
1,985,464	-				+0.0
1,985,464	-				-0.0
1,985,464	-				-0.1
1,985,469	-				-1.0
1,985,484	+				-2.1
1,985,484	+				-4.7
1,985,537	+				-5.1
1,985,550	-				+0.0
1,985,564	-				+0.2
1,985,573	-				-0.7
1,985,592	-				-1.3
1,985,618	-				-0.9
1,985,683	-				+0.6
1,985,726	-				+0.1
1,985,795	+				-0.1
1,985,808	+				+0.2
1,985,811	-				-0.7
1,985,839	+				+0.4
1,985,898	+				-0.2
1,985,921	-				-0.8