Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18635

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,965,841	-				-0.5
1,965,847	+				-0.4
1,965,847	+				+1.0
1,965,855	-				-1.0
1,965,859	+				-0.9
1,965,867	-				-0.5
1,965,891	-				+1.1
1,965,902	-				+0.3
1,965,946	-				+0.2
1,965,981	-				-0.3
1,965,986	+				+0.2
1,965,986	+				-0.8
1,965,987	+				+0.8
1,965,988	+				-0.2
1,965,994	-				+0.1
1,966,017	+				+0.0
1,966,025	-				-1.2
1,966,121	-				+0.5
1,966,835	-				-1.1
1,966,910	-				-0.8
1,966,917	-				-1.0
1,966,936	-				-0.7
1,966,953	-				-2.1
1,967,301	-		BBR_RS18635	0.30	-2.2
1,967,328	-		BBR_RS18635	0.31	+2.4
1,967,434	-		BBR_RS18635	0.38	-1.9
1,967,441	-		BBR_RS18635	0.38	-1.2
1,967,441	-		BBR_RS18635	0.38	-2.1
1,967,441	-		BBR_RS18635	0.38	-1.0
1,967,489	-		BBR_RS18635	0.41	-1.7
1,967,505	-		BBR_RS18635	0.42	-0.4
1,967,525	-		BBR_RS18635	0.43	+0.3
1,967,589	-		BBR_RS18635	0.47	-1.5
1,967,783	-		BBR_RS18635	0.58	+1.0
1,967,934	-		BBR_RS18635	0.67	+0.4
1,968,046	-		BBR_RS18635	0.74	-1.4
1,968,168	+		BBR_RS18635	0.81	+2.4
1,968,286	-		BBR_RS18635	0.88	-0.8
1,968,305	-		BBR_RS18635	0.89	-0.2
1,968,353	-				-0.7
1,968,377	-				-0.8
1,968,428	-				-1.1
1,968,429	-				-0.4
1,968,492	-				+0.2
1,968,492	-				-0.4
1,968,494	+				-0.4
1,968,504	+				-1.0
1,968,504	+				+0.8
1,968,541	-				-1.1
1,968,607	+				-1.0
1,968,608	-				+0.1
1,968,608	-				+0.2
1,968,611	-				+0.2
1,968,611	-				-0.0
1,968,652	+				+0.5
1,968,660	-				+0.5
1,968,660	-				+0.1
1,968,660	-				-0.2
1,968,663	+				+0.1
1,968,671	-				+1.4
1,968,720	-				+0.5
1,968,742	-		BBR_RS18640	0.10	+0.6
1,968,754	+		BBR_RS18640	0.11	+0.6
1,968,762	-		BBR_RS18640	0.12	+1.4
1,968,762	-		BBR_RS18640	0.12	-0.0
1,968,762	-		BBR_RS18640	0.12	+1.4
1,968,762	-		BBR_RS18640	0.12	+0.2
1,968,772	-		BBR_RS18640	0.12	+0.4
1,968,772	-		BBR_RS18640	0.12	+0.1
1,968,781	+		BBR_RS18640	0.13	-0.2
1,968,857	-		BBR_RS18640	0.19	-1.7
1,968,857	-		BBR_RS18640	0.19	+1.3
1,968,874	-		BBR_RS18640	0.20	+0.8
1,968,890	+		BBR_RS18640	0.22	+0.4
1,968,898	-		BBR_RS18640	0.22	+1.0
1,968,908	-		BBR_RS18640	0.23	+1.0
1,968,908	-		BBR_RS18640	0.23	+0.6
1,968,933	+		BBR_RS18640	0.25	-1.1
1,968,987	-		BBR_RS18640	0.29	+0.5
1,969,002	-		BBR_RS18640	0.30	+0.2
1,969,069	-		BBR_RS18640	0.35	+1.3
1,969,079	-		BBR_RS18640	0.36	+0.2
1,969,081	+		BBR_RS18640	0.36	+1.0
1,969,120	-		BBR_RS18640	0.39	+0.2
1,969,120	-		BBR_RS18640	0.39	-1.4
1,969,172	-		BBR_RS18640	0.43	+1.0
1,969,174	+		BBR_RS18640	0.44	+0.0
1,969,208	-		BBR_RS18640	0.46	+0.4
1,969,313	+		BBR_RS18640	0.54	-1.0
1,969,428	-		BBR_RS18640	0.63	+1.0
1,969,428	-		BBR_RS18640	0.63	-0.4
1,969,428	-		BBR_RS18640	0.63	-0.4