Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18215

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,873,791	-				+0.3
1,873,796	-				+0.3
1,873,806	-				-0.0
1,873,817	-				-0.4
1,873,821	+				-1.3
1,873,842	+				-0.5
1,873,842	+				-1.9
1,873,868	+				+0.3
1,873,955	-		BBR_RS18215	0.11	-2.3
1,873,955	-		BBR_RS18215	0.11	-2.5
1,873,955	-		BBR_RS18215	0.11	-0.8
1,873,972	-		BBR_RS18215	0.12	-1.5
1,873,989	-		BBR_RS18215	0.13	-1.0
1,873,989	-		BBR_RS18215	0.13	+0.5
1,874,032	-		BBR_RS18215	0.16	-1.3
1,874,055	-		BBR_RS18215	0.17	-2.0
1,874,114	-		BBR_RS18215	0.21	+0.1
1,874,232	-		BBR_RS18215	0.28	-0.3
1,874,242	-		BBR_RS18215	0.29	+0.1
1,874,254	-		BBR_RS18215	0.29	-1.0
1,874,256	-		BBR_RS18215	0.30	-1.7
1,874,268	-		BBR_RS18215	0.30	-0.7
1,874,334	-		BBR_RS18215	0.34	-0.9
1,874,438	-		BBR_RS18215	0.41	-1.3
1,874,460	-		BBR_RS18215	0.42	-1.8
1,874,460	-		BBR_RS18215	0.42	+0.1
1,874,553	-		BBR_RS18215	0.48	+0.1
1,874,555	-		BBR_RS18215	0.48	-2.1
1,874,622	-		BBR_RS18215	0.53	-3.3
1,874,685	-		BBR_RS18215	0.56	-0.9
1,874,781	-		BBR_RS18215	0.63	-1.2
1,874,834	-		BBR_RS18215	0.66	-1.1
1,874,971	+		BBR_RS18215	0.74	-1.6
1,874,971	+		BBR_RS18215	0.74	-1.2
1,874,971	+		BBR_RS18215	0.74	-1.5
1,874,971	+		BBR_RS18215	0.74	+0.8
1,874,971	+		BBR_RS18215	0.74	-2.5
1,874,971	+		BBR_RS18215	0.74	-0.9
1,874,971	+		BBR_RS18215	0.74	-2.1
1,874,979	-		BBR_RS18215	0.75	-0.2
1,874,979	-		BBR_RS18215	0.75	-0.0
1,874,979	-		BBR_RS18215	0.75	+0.8
1,874,979	-		BBR_RS18215	0.75	-0.2
1,875,051	-		BBR_RS18215	0.79	-0.4
1,875,065	-		BBR_RS18215	0.80	-0.8
1,875,106	+		BBR_RS18215	0.83	+0.2
1,875,124	-		BBR_RS18215	0.84	-1.7
1,875,184	-		BBR_RS18215	0.88	-1.7
1,875,231	-				+0.1
1,875,236	-				-1.5
1,875,236	-				-1.7
1,875,279	-				+0.0
1,875,279	-				-0.9
1,875,279	-				-1.8
1,875,288	-				-0.2
1,875,309	-				-0.4
1,875,389	+				+0.2
1,875,392	-				+1.0
1,875,399	+				+0.0
1,875,417	+				-0.5
1,875,425	+				-0.2
1,875,425	+				+0.8
1,875,425	+				+0.9
1,875,425	+				-0.5
1,875,446	+				-1.8
1,875,493	+				-3.1
1,875,500	-				-0.5
1,875,523	-				-0.7
1,875,525	-				-1.9
1,875,529	+				-1.9
1,875,533	-				-1.9
1,875,545	-				-2.2
1,875,547	-				-1.1
1,875,547	-				-1.6
1,875,547	-				-0.4
1,875,547	-				-1.2
1,875,547	-				-1.0
1,875,565	+		BBR_RS18220	0.12	-1.2
1,875,589	-		BBR_RS18220	0.14	-2.7
1,875,604	-		BBR_RS18220	0.16	-1.5
1,875,604	-		BBR_RS18220	0.16	-2.7
1,875,605	-		BBR_RS18220	0.16	-1.6
1,875,628	-		BBR_RS18220	0.19	-1.1
1,875,642	-		BBR_RS18220	0.20	-1.0
1,875,649	-		BBR_RS18220	0.21	-1.5
1,875,692	-		BBR_RS18220	0.26	-2.6
1,875,715	+		BBR_RS18220	0.28	-0.6
1,875,798	-		BBR_RS18220	0.37	-1.5
1,875,809	+		BBR_RS18220	0.38	-1.8
1,875,815	-		BBR_RS18220	0.39	-0.9
1,875,818	+		BBR_RS18220	0.39	-2.2
1,875,841	-		BBR_RS18220	0.42	-0.3
1,875,844	-		BBR_RS18220	0.42	-1.3
1,875,846	+		BBR_RS18220	0.42	-1.6
1,875,846	+		BBR_RS18220	0.42	-1.5
1,875,867	+		BBR_RS18220	0.44	-0.8
1,875,925	+		BBR_RS18220	0.51	-2.2
1,875,932	+		BBR_RS18220	0.51	-1.1
1,875,971	-		BBR_RS18220	0.56	-0.5
1,875,979	+		BBR_RS18220	0.57	-0.9
1,876,022	+		BBR_RS18220	0.61	-1.3
1,876,022	+		BBR_RS18220	0.61	-1.4
1,876,037	+		BBR_RS18220	0.63	-0.7
1,876,038	-		BBR_RS18220	0.63	-2.2
1,876,046	+		BBR_RS18220	0.64	-0.7
1,876,055	-		BBR_RS18220	0.65	-0.9
1,876,102	+		BBR_RS18220	0.70	-1.2
1,876,107	+		BBR_RS18220	0.70	-1.2
1,876,151	-		BBR_RS18220	0.75	-1.2
1,876,157	+		BBR_RS18220	0.76	-1.5
1,876,182	-		BBR_RS18220	0.78	-2.7
1,876,212	-		BBR_RS18220	0.82	+0.1
1,876,212	-		BBR_RS18220	0.82	-2.7
1,876,217	+		BBR_RS18220	0.82	-2.4
1,876,217	+		BBR_RS18220	0.82	-2.6
1,876,222	+		BBR_RS18220	0.83	-1.1
1,876,222	+		BBR_RS18220	0.83	-2.0
1,876,222	+		BBR_RS18220	0.83	-2.4
1,876,227	+		BBR_RS18220	0.83	-1.4
1,876,230	-		BBR_RS18220	0.84	-1.9
1,876,230	-		BBR_RS18220	0.84	+0.3
1,876,230	-		BBR_RS18220	0.84	-2.1
1,876,235	-		BBR_RS18220	0.84	-0.6
1,876,244	+		BBR_RS18220	0.85	-0.7
1,876,246	+		BBR_RS18220	0.85	-1.1
1,876,252	-		BBR_RS18220	0.86	-2.5
1,876,256	+		BBR_RS18220	0.86	-0.2
1,876,262	-		BBR_RS18220	0.87	-1.9
1,876,262	-		BBR_RS18220	0.87	-2.1
1,876,270	+		BBR_RS18220	0.88	-1.5
1,876,314	-				-0.1
1,876,314	-				-0.2
1,876,327	+				+0.9
1,876,327	+				-0.3
1,876,327	+				+0.6
1,876,335	-				-1.1
1,876,335	-				-0.5
1,876,349	+				+0.7
1,876,354	+				-0.4
1,876,362	-				-1.0
1,876,363	-				-1.1