Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18180

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,863,093	+				-0.4
1,863,098	-				+0.2
1,863,108	+				+0.2
1,863,116	-				-0.2
1,863,116	-				-0.3
1,863,116	-				+0.5
1,863,122	-				+0.7
1,863,126	-				+0.0
1,863,127	-				-0.3
1,863,198	+				+0.5
1,863,211	-				-0.4
1,863,211	-				+0.1
1,863,220	+				+0.6
1,863,228	-				-0.8
1,863,236	-				-0.8
1,863,251	+				+0.5
1,863,310	+				+1.3
1,863,464	-		BBR_RS18175	0.32	+0.7
1,863,489	-		BBR_RS18175	0.36	+0.4
1,863,975	+				-0.7
1,864,012	-				+0.4
1,864,068	+				-1.8
1,864,090	-				-0.1
1,864,118	+				-0.8
1,864,136	-				-1.2
1,864,136	-				+0.0
1,864,146	-				-0.7
1,864,163	-				-0.9
1,864,194	-				-0.7
1,864,286	-		BBR_RS18180	0.13	-1.3
1,864,339	-		BBR_RS18180	0.15	-0.8
1,864,339	-		BBR_RS18180	0.15	-1.3
1,864,339	-		BBR_RS18180	0.15	-1.0
1,864,361	-		BBR_RS18180	0.16	-1.1
1,864,372	+		BBR_RS18180	0.17	-0.3
1,864,380	-		BBR_RS18180	0.17	-1.4
1,864,499	-		BBR_RS18180	0.23	-1.1
1,864,499	-		BBR_RS18180	0.23	-1.3
1,864,570	-		BBR_RS18180	0.26	-0.8
1,864,575	-		BBR_RS18180	0.26	-1.3
1,864,593	-		BBR_RS18180	0.27	-0.6
1,864,593	-		BBR_RS18180	0.27	-2.5
1,864,647	-		BBR_RS18180	0.30	-0.6
1,864,667	-		BBR_RS18180	0.31	-0.6
1,864,683	-		BBR_RS18180	0.31	-1.0
1,864,683	-		BBR_RS18180	0.31	-0.7
1,864,731	-		BBR_RS18180	0.34	-2.3
1,864,771	-		BBR_RS18180	0.36	-0.8
1,864,795	-		BBR_RS18180	0.37	-1.2
1,864,817	-		BBR_RS18180	0.38	-1.2
1,864,850	-		BBR_RS18180	0.39	-1.3
1,864,856	+		BBR_RS18180	0.40	-0.7
1,864,931	-		BBR_RS18180	0.43	-0.4
1,864,945	-		BBR_RS18180	0.44	+0.3
1,864,945	-		BBR_RS18180	0.44	+0.0
1,864,945	-		BBR_RS18180	0.44	-1.4
1,864,965	-		BBR_RS18180	0.45	-1.7
1,865,059	-		BBR_RS18180	0.49	-1.6
1,865,122	-		BBR_RS18180	0.52	-1.6
1,865,236	-		BBR_RS18180	0.58	-1.1
1,865,318	-		BBR_RS18180	0.62	+0.3
1,865,342	-		BBR_RS18180	0.63	+0.8
1,865,352	-		BBR_RS18180	0.63	-2.1
1,865,451	-		BBR_RS18180	0.68	-2.7
1,865,471	+		BBR_RS18180	0.69	-0.5
1,865,509	-		BBR_RS18180	0.71	-2.0
1,865,614	-		BBR_RS18180	0.76	-1.4
1,865,614	-		BBR_RS18180	0.76	+1.3
1,865,655	-		BBR_RS18180	0.78	-2.0
1,865,655	-		BBR_RS18180	0.78	-0.5
1,865,697	-		BBR_RS18180	0.80	-1.5
1,865,699	+		BBR_RS18180	0.80	+1.0
1,865,707	-		BBR_RS18180	0.80	-1.2
1,865,722	+		BBR_RS18180	0.81	-1.6
1,865,785	-		BBR_RS18180	0.84	-0.1
1,865,853	-		BBR_RS18180	0.87	-2.0
1,865,862	-		BBR_RS18180	0.88	-2.0
1,865,988	-				-1.7
1,866,010	+				+1.0
1,866,155	-				-0.1
1,866,156	-				-0.9
1,866,173	-				-0.4
1,866,173	-				-0.7
1,866,238	-		BBR_RS18185	0.21	-0.2
1,866,306	-		BBR_RS18185	0.33	+0.2
1,866,306	-		BBR_RS18185	0.33	-1.4
1,866,381	-		BBR_RS18185	0.46	+1.3
1,866,447	+		BBR_RS18185	0.58	+1.1
1,866,448	-		BBR_RS18185	0.58	-0.0
1,866,470	-		BBR_RS18185	0.62	-0.2
1,866,498	-		BBR_RS18185	0.67	-0.0
1,866,501	+		BBR_RS18185	0.68	+1.2
1,866,503	-		BBR_RS18185	0.68	-1.8
1,866,509	-		BBR_RS18185	0.69	+0.1
1,866,518	-		BBR_RS18185	0.71	+2.2
1,866,585	+		BBR_RS18185	0.83	-2.1
1,866,585	+		BBR_RS18185	0.83	+0.3
1,866,588	-		BBR_RS18185	0.83	+0.2
1,866,631	-				+0.9
1,866,636	-				+0.7
1,866,641	-				+0.3
1,866,656	+				+0.4