Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18050

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,840,061	-				-0.2
1,840,074	-				+0.1
1,840,082	-				+0.6
1,840,146	-		BBR_RS18050	0.14	-1.3
1,840,173	-		BBR_RS18050	0.18	-1.3
1,840,293	-		BBR_RS18050	0.36	-1.4
1,840,326	-		BBR_RS18050	0.41	-0.1
1,840,489	-		BBR_RS18050	0.64	-0.0
1,840,542	-		BBR_RS18050	0.72	+0.3
1,840,542	-		BBR_RS18050	0.72	-1.3
1,840,634	-		BBR_RS18050	0.85	+0.6
1,840,707	+				-0.2
1,840,717	+				-0.1
1,840,725	-				-0.1
1,840,771	-				+1.0
1,840,795	-				+0.4
1,840,801	+				-0.8
1,840,801	+				-0.8
1,840,801	+				-0.3
1,840,809	-				+0.6
1,840,809	-				-1.0
1,840,851	-				+0.0
1,840,853	+				-0.3
1,840,861	-				+0.1
1,840,861	-				-0.4
1,840,877	+				-0.8
1,840,879	+				-0.3
1,840,927	+				+0.9
1,840,964	-		BBR_RS18055	0.14	-0.0
1,840,979	-		BBR_RS18055	0.16	-0.1
1,840,984	-		BBR_RS18055	0.16	+0.2
1,840,984	-		BBR_RS18055	0.16	-1.1
1,841,005	-		BBR_RS18055	0.19	-0.5
1,841,082	+		BBR_RS18055	0.30	+0.2
1,841,085	+		BBR_RS18055	0.31	-0.7
1,841,085	+		BBR_RS18055	0.31	+0.1
1,841,120	+		BBR_RS18055	0.36	-0.2
1,841,128	-		BBR_RS18055	0.37	+0.7
1,841,150	+		BBR_RS18055	0.40	+0.1
1,841,163	-		BBR_RS18055	0.42	-0.3
1,841,168	-		BBR_RS18055	0.43	+0.7
1,841,216	+		BBR_RS18055	0.49	-0.2
1,841,216	+		BBR_RS18055	0.49	+1.4
1,841,217	-		BBR_RS18055	0.50	-0.0
1,841,269	+		BBR_RS18055	0.57	+0.5
1,841,277	+		BBR_RS18055	0.58	-0.3
1,841,286	-		BBR_RS18055	0.59	-1.6
1,841,286	-		BBR_RS18055	0.59	+0.0
1,841,290	+		BBR_RS18055	0.60	+0.2
1,841,296	-		BBR_RS18055	0.61	+0.6
1,841,306	+		BBR_RS18055	0.62	+1.0
1,841,322	-		BBR_RS18055	0.64	-0.2
1,841,324	+		BBR_RS18055	0.65	-0.5
1,841,337	+		BBR_RS18055	0.67	-1.5
1,841,337	+		BBR_RS18055	0.67	+1.0
1,841,349	-		BBR_RS18055	0.68	-1.0
1,841,355	-		BBR_RS18055	0.69	-0.2
1,841,370	+		BBR_RS18055	0.71	+0.4
1,841,370	+		BBR_RS18055	0.71	-0.1
1,841,370	+		BBR_RS18055	0.71	-1.3
1,841,378	-		BBR_RS18055	0.72	-0.8
1,841,378	-		BBR_RS18055	0.72	+0.5
1,841,378	-		BBR_RS18055	0.72	-0.5
1,841,380	+		BBR_RS18055	0.73	-0.2
1,841,388	-		BBR_RS18055	0.74	-1.2
1,841,389	+		BBR_RS18055	0.74	-0.8
1,841,389	+		BBR_RS18055	0.74	+1.1
1,841,438	+		BBR_RS18055	0.81	-0.5
1,841,446	-		BBR_RS18055	0.82	-0.7
1,841,451	+		BBR_RS18055	0.83	-0.1
1,841,451	+		BBR_RS18055	0.83	+0.3
1,841,488	+		BBR_RS18055	0.88	-0.2
1,841,503	+				-0.3
1,841,504	-				-0.2
1,841,511	-				-0.3
1,841,511	-				+0.1
1,841,511	-				-0.1
1,841,511	-				+1.1
1,841,511	-				-0.0
1,841,511	-				+0.7
1,841,511	-				+0.6
1,841,624	+				-0.0
1,841,626	-				+0.4
1,841,666	+		BBR_RS18060	0.11	-0.3
1,841,681	+		BBR_RS18060	0.13	-0.3
1,841,689	-		BBR_RS18060	0.14	+0.5