Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17640

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,735,225	+		BBR_RS17635	0.55	+0.4
1,735,226	+		BBR_RS17635	0.55	-0.2
1,735,226	+		BBR_RS17635	0.55	+0.7
1,735,233	-		BBR_RS17635	0.56	+1.3
1,735,233	-		BBR_RS17635	0.56	-0.4
1,735,234	-		BBR_RS17635	0.56	+0.7
1,735,234	-		BBR_RS17635	0.56	+0.8
1,735,234	-		BBR_RS17635	0.56	+0.3
1,735,236	+		BBR_RS17635	0.56	+0.5
1,735,244	-		BBR_RS17635	0.56	-2.3
1,735,244	-		BBR_RS17635	0.56	-0.0
1,735,244	-		BBR_RS17635	0.56	+0.2
1,735,252	-		BBR_RS17635	0.57	-1.0
1,735,307	-		BBR_RS17635	0.60	-0.5
1,735,321	-		BBR_RS17635	0.60	+0.2
1,735,360	-		BBR_RS17635	0.62	-0.3
1,735,360	-		BBR_RS17635	0.62	+0.2
1,735,369	-		BBR_RS17635	0.63	+0.0
1,735,380	-		BBR_RS17635	0.64	+0.2
1,735,382	-		BBR_RS17635	0.64	-0.2
1,735,397	-		BBR_RS17635	0.64	+0.8
1,735,410	+		BBR_RS17635	0.65	-0.0
1,735,418	-		BBR_RS17635	0.66	-0.1
1,735,418	-		BBR_RS17635	0.66	-0.3
1,735,456	+		BBR_RS17635	0.68	-0.5
1,735,456	+		BBR_RS17635	0.68	-0.6
1,735,464	-		BBR_RS17635	0.68	-1.2
1,735,473	+		BBR_RS17635	0.69	-0.3
1,735,504	+		BBR_RS17635	0.70	-0.0
1,735,546	+		BBR_RS17635	0.72	+2.1
1,735,549	-		BBR_RS17635	0.73	-0.3
1,735,552	-		BBR_RS17635	0.73	+1.8
1,735,557	-		BBR_RS17635	0.73	+0.2
1,735,563	+		BBR_RS17635	0.73	+0.1
1,735,570	+		BBR_RS17635	0.74	-0.2
1,735,571	-		BBR_RS17635	0.74	-1.0
1,735,578	-		BBR_RS17635	0.74	+0.2
1,735,588	+		BBR_RS17635	0.75	-0.1
1,735,604	-		BBR_RS17635	0.76	+0.5
1,735,609	-		BBR_RS17635	0.76	+0.8
1,735,654	-		BBR_RS17635	0.78	-1.3
1,735,656	+		BBR_RS17635	0.78	-0.4
1,735,658	-		BBR_RS17635	0.78	+0.2
1,735,661	+		BBR_RS17635	0.79	-1.1
1,735,667	+		BBR_RS17635	0.79	+0.4
1,735,676	+		BBR_RS17635	0.79	-0.1
1,735,691	-		BBR_RS17635	0.80	-0.2
1,735,713	+		BBR_RS17635	0.81	+0.3
1,735,721	-		BBR_RS17635	0.82	+0.2
1,735,732	+		BBR_RS17635	0.82	-0.0
1,735,735	-		BBR_RS17635	0.83	+0.9
1,735,756	-		BBR_RS17635	0.84	-0.6
1,735,778	+		BBR_RS17635	0.85	-1.5
1,735,778	+		BBR_RS17635	0.85	+0.9
1,735,778	+		BBR_RS17635	0.85	+0.8
1,735,781	-		BBR_RS17635	0.85	+0.1
1,735,781	-		BBR_RS17635	0.85	-0.4
1,735,781	-		BBR_RS17635	0.85	-0.8
1,735,786	-		BBR_RS17635	0.85	+0.7
1,735,786	-		BBR_RS17635	0.85	-0.1
1,735,793	+		BBR_RS17635	0.86	-0.0
1,735,806	-		BBR_RS17635	0.86	-0.1
1,735,829	+		BBR_RS17635	0.88	+0.5
1,735,845	+		BBR_RS17635	0.89	-0.2
1,735,848	-		BBR_RS17635	0.89	-0.1
1,735,889	+				-0.3
1,735,921	-				+0.2
1,735,921	-				-0.7
1,735,921	-				+0.2
1,735,921	-				+0.5
1,735,931	+				+0.1
1,735,980	+				+0.8
1,735,988	-				-0.1
1,736,001	-				-0.8
1,736,006	-				-0.6
1,736,068	-				+1.7
1,736,068	-				-0.5
1,736,073	-				+0.3
1,736,085	+				-0.8
1,736,090	-				-0.4
1,736,173	+				-0.4
1,736,248	-				-2.2
1,736,373	-		BBR_RS17640	0.52	-0.4
1,736,373	-		BBR_RS17640	0.52	-1.0
1,736,408	+		BBR_RS17640	0.64	-2.3
1,736,410	+		BBR_RS17640	0.65	-0.3
1,736,431	+		BBR_RS17640	0.72	-1.0
1,736,463	+		BBR_RS17640	0.84	-1.2
1,736,532	+				-0.6
1,736,533	-				-0.2
1,736,533	-				+0.2
1,736,576	+				+0.3
1,736,674	+				-0.6
1,736,679	+				-0.1
1,736,689	+				+0.5
1,736,701	+				-0.8
1,736,711	-				+0.4
1,736,744	+				+0.5
1,736,764	-				+0.6