Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17290

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,655,699	+				+0.1
1,655,717	-				-0.0
1,655,717	-				+0.0
1,655,717	-				+0.3
1,655,717	-				+1.2
1,655,717	-				+0.8
1,655,816	-				+0.8
1,655,834	+				+0.2
1,655,855	+				+0.5
1,655,934	+				+0.5
1,655,935	+				+0.7
1,655,969	+				+0.3
1,656,633	-				-0.2
1,656,674	+				-0.6
1,656,725	+				-0.2
1,656,725	+				+0.7
1,656,725	+				+0.6
1,656,742	+				-0.5
1,656,968	+		BBR_RS17290	0.14	+0.1
1,656,968	+		BBR_RS17290	0.14	+0.6
1,656,968	+		BBR_RS17290	0.14	-0.5
1,656,968	+		BBR_RS17290	0.14	-1.8
1,656,968	+		BBR_RS17290	0.14	+0.0
1,656,976	-		BBR_RS17290	0.14	-1.3
1,657,256	-		BBR_RS17290	0.26	-0.7
1,657,271	+		BBR_RS17290	0.27	+0.3
1,657,286	+		BBR_RS17290	0.27	-0.0
1,657,286	+		BBR_RS17290	0.27	-0.8
1,657,286	+		BBR_RS17290	0.27	-1.6
1,657,357	+		BBR_RS17290	0.30	-1.7
1,657,357	+		BBR_RS17290	0.30	+0.1
1,657,357	+		BBR_RS17290	0.30	-0.7
1,657,418	+		BBR_RS17290	0.33	+1.0
1,657,538	+		BBR_RS17290	0.38	-0.3
1,657,607	+		BBR_RS17290	0.41	-0.4
1,657,624	-		BBR_RS17290	0.42	+0.7
1,657,698	+		BBR_RS17290	0.45	-0.1
1,657,811	-		BBR_RS17290	0.50	+0.1
1,657,823	-		BBR_RS17290	0.50	-0.4
1,657,972	+		BBR_RS17290	0.56	-0.9
1,657,985	+		BBR_RS17290	0.57	-0.2
1,658,043	-		BBR_RS17290	0.59	-1.7
1,658,061	-		BBR_RS17290	0.60	+0.5
1,658,096	-		BBR_RS17290	0.62	-1.2
1,658,181	-		BBR_RS17290	0.65	-1.2
1,658,321	+		BBR_RS17290	0.71	-1.4
1,658,321	+		BBR_RS17290	0.71	+0.3
1,658,321	+		BBR_RS17290	0.71	-0.2
1,658,329	-		BBR_RS17290	0.72	+0.6
1,658,402	+		BBR_RS17290	0.75	-1.0
1,658,487	-		BBR_RS17290	0.78	-0.5
1,658,515	+		BBR_RS17290	0.80	+0.4
1,658,517	-		BBR_RS17290	0.80	-0.5
1,658,640	+		BBR_RS17290	0.85	-0.6
1,658,641	-		BBR_RS17290	0.85	+0.0
1,658,658	-		BBR_RS17290	0.86	-1.1
1,658,664	+		BBR_RS17290	0.86	-1.9
1,658,855	-				+0.2
1,658,884	+				+0.1
1,658,884	+				+0.8
1,658,884	+				-0.1
1,658,884	+				-0.6
1,658,884	+				-0.8
1,658,884	+				+0.0
1,658,892	-				+1.1
1,658,892	-				-0.4
1,658,892	-				+0.3
1,658,903	+				-0.9
1,658,955	+				-0.7
1,658,980	+				+0.5
1,658,980	+				+0.6
1,658,980	+				+0.1
1,658,990	+				-0.1
1,658,998	-				+0.1
1,659,032	+				-0.2
1,659,123	+		BBR_RS17295	0.20	+0.7
1,659,206	+		BBR_RS17295	0.47	-0.2
1,659,216	+		BBR_RS17295	0.51	-1.2
1,659,216	+		BBR_RS17295	0.51	-0.3
1,659,221	+		BBR_RS17295	0.52	-1.1
1,659,221	+		BBR_RS17295	0.52	+0.2
1,659,221	+		BBR_RS17295	0.52	-0.2
1,659,233	+		BBR_RS17295	0.56	-0.6
1,659,243	-		BBR_RS17295	0.59	-1.5
1,659,273	-		BBR_RS17295	0.69	-0.2
1,659,320	-		BBR_RS17295	0.85	+0.9
1,659,320	-		BBR_RS17295	0.85	+0.1
1,659,320	-		BBR_RS17295	0.85	+0.2
1,659,361	+				-0.9
1,659,368	+				+1.4
1,659,379	+				+0.3
1,659,395	+				+0.3
1,659,395	+				-0.7
1,659,445	+				+0.9
1,659,490	+		BBR_RS17300	0.11	+0.0
1,659,494	+		BBR_RS17300	0.12	+0.6
1,659,497	-		BBR_RS17300	0.13	+0.5
1,659,498	-		BBR_RS17300	0.13	+0.2
1,659,498	-		BBR_RS17300	0.13	+0.1
1,659,504	+		BBR_RS17300	0.15	-0.5
1,659,526	-		BBR_RS17300	0.21	+0.9
1,659,526	-		BBR_RS17300	0.21	-0.2
1,659,527	-		BBR_RS17300	0.21	+0.1
1,659,544	+		BBR_RS17300	0.26	+0.3
1,659,544	+		BBR_RS17300	0.26	+0.1
1,659,547	-		BBR_RS17300	0.27	-0.4
1,659,612	-		BBR_RS17300	0.44	-0.6
1,659,727	+		BBR_RS17300	0.76	+0.5
1,659,876	-				-0.1
1,659,919	-				-0.4