Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16905

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,563,001	-		BBR_RS16900	0.25	-0.5
1,563,009	-		BBR_RS16900	0.27	+0.1
1,563,009	-		BBR_RS16900	0.27	+0.4
1,563,025	-		BBR_RS16900	0.30	+0.8
1,563,042	+		BBR_RS16900	0.34	-0.2
1,563,139	+		BBR_RS16900	0.53	+0.4
1,563,141	+		BBR_RS16900	0.54	+0.3
1,563,206	-		BBR_RS16900	0.67	+0.5
1,563,234	-		BBR_RS16900	0.73	+0.6
1,563,242	+		BBR_RS16900	0.74	+0.0
1,563,249	-		BBR_RS16900	0.76	+1.0
1,563,298	-		BBR_RS16900	0.86	-0.0
1,563,298	-		BBR_RS16900	0.86	+0.0
1,563,305	-		BBR_RS16900	0.87	+0.2
1,563,361	+				+0.5
1,563,379	-				-0.9
1,563,911	+				+0.6
1,563,923	+				-1.1
1,563,940	+				+0.4
1,563,954	-				-0.2
1,563,959	+				-0.5
1,563,969	+				+0.0
1,564,074	-		BBR_RS16905	0.11	-0.7
1,564,145	-		BBR_RS16905	0.18	+0.9
1,564,175	-		BBR_RS16905	0.21	-1.6
1,564,190	+		BBR_RS16905	0.23	-0.9
1,564,347	-		BBR_RS16905	0.38	+0.1
1,564,359	+		BBR_RS16905	0.39	+1.3
1,564,367	-		BBR_RS16905	0.40	-1.3
1,564,438	+		BBR_RS16905	0.47	-0.4
1,564,518	-		BBR_RS16905	0.54	-1.3
1,564,566	-		BBR_RS16905	0.59	-0.7
1,564,576	-		BBR_RS16905	0.60	-2.1
1,564,623	-		BBR_RS16905	0.64	-1.4
1,564,660	+		BBR_RS16905	0.68	-0.5
1,564,668	+		BBR_RS16905	0.69	-1.0
1,564,676	-		BBR_RS16905	0.70	+0.9
1,564,678	-		BBR_RS16905	0.70	-0.3
1,564,686	-		BBR_RS16905	0.71	-2.2
1,564,700	-		BBR_RS16905	0.72	+0.4
1,564,761	+		BBR_RS16905	0.78	+1.4
1,564,766	+		BBR_RS16905	0.78	+0.3
1,564,768	-		BBR_RS16905	0.78	-0.2
1,564,844	-		BBR_RS16905	0.86	+0.1
1,564,889	-				-0.1
1,564,911	-				-1.6
1,564,957	-				+0.7
1,564,957	-				-0.2
1,565,000	-				+0.5