Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16635

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,499,782	+		BBR_RS16630	0.34	+1.0
1,499,782	+		BBR_RS16630	0.34	-0.1
1,499,901	-		BBR_RS16630	0.48	+0.3
1,499,948	-		BBR_RS16630	0.53	+1.0
1,500,140	-		BBR_RS16630	0.75	+0.1
1,500,185	-		BBR_RS16630	0.81	+0.5
1,500,199	+		BBR_RS16630	0.82	+0.1
1,500,254	+		BBR_RS16630	0.89	+0.1
1,500,254	+		BBR_RS16630	0.89	+0.0
1,500,295	-				-1.0
1,500,456	-				-0.9
1,500,474	-				-0.0
1,500,489	+				-0.2
1,500,490	-				+0.8
1,500,490	-				+0.9
1,500,593	-				+0.5
1,500,619	+				-0.3
1,500,629	+				-0.8
1,500,637	-				-0.5
1,500,637	-				+0.6
1,500,637	-				-0.1
1,500,662	+				+0.7
1,500,696	+				-1.0
1,500,696	+				+0.8
1,500,806	+				-0.5
1,500,965	-		BBR_RS16635	0.15	+1.7
1,501,331	+		BBR_RS16635	0.33	+1.3
1,501,575	+		BBR_RS16635	0.46	+0.3
1,501,919	-		BBR_RS16635	0.63	-2.0
1,501,984	-		BBR_RS16635	0.66	+1.3
1,502,285	-		BBR_RS16635	0.81	-0.5
1,502,464	-		BBR_RS16635	0.90	+1.3
1,502,678	+				+1.2
1,502,689	-				-0.3
1,502,719	-				+0.4
1,502,774	-				-1.0
1,502,795	-		BBR_RS16640	0.10	+1.3
1,502,903	+		BBR_RS16640	0.21	+0.7
1,502,911	-		BBR_RS16640	0.22	+0.1
1,502,953	-		BBR_RS16640	0.26	+0.7
1,503,206	-		BBR_RS16640	0.51	-0.0
1,503,534	-		BBR_RS16640	0.84	-0.8