Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16620

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,496,741	+		BBR_RS16615	0.21	-0.4
1,496,741	+		BBR_RS16615	0.21	+0.6
1,496,741	+		BBR_RS16615	0.21	+0.7
1,496,749	-		BBR_RS16615	0.21	+0.6
1,496,749	-		BBR_RS16615	0.21	-0.4
1,496,759	-		BBR_RS16615	0.22	+0.9
1,496,823	+		BBR_RS16615	0.27	+0.4
1,496,823	+		BBR_RS16615	0.27	+0.1
1,496,850	-		BBR_RS16615	0.29	-1.7
1,496,856	+		BBR_RS16615	0.30	-2.1
1,496,875	-		BBR_RS16615	0.31	-1.6
1,496,917	+		BBR_RS16615	0.35	-1.0
1,496,917	+		BBR_RS16615	0.35	-1.2
1,496,917	+		BBR_RS16615	0.35	-1.2
1,496,936	+		BBR_RS16615	0.36	-0.3
1,496,944	-		BBR_RS16615	0.37	+0.2
1,496,944	-		BBR_RS16615	0.37	+0.2
1,496,969	+		BBR_RS16615	0.39	-1.1
1,497,014	+		BBR_RS16615	0.42	-1.1
1,497,060	+		BBR_RS16615	0.46	-0.9
1,497,075	+		BBR_RS16615	0.47	-1.6
1,497,091	-		BBR_RS16615	0.49	+1.0
1,497,145	+		BBR_RS16615	0.53	-0.9
1,497,155	+		BBR_RS16615	0.54	-0.3
1,497,191	-		BBR_RS16615	0.57	-0.8
1,497,214	-		BBR_RS16615	0.58	+0.0
1,497,264	-		BBR_RS16615	0.62	+0.6
1,497,312	+		BBR_RS16615	0.66	-1.4
1,497,348	-		BBR_RS16615	0.69	-0.8
1,497,412	-		BBR_RS16615	0.74	+0.7
1,497,497	+		BBR_RS16615	0.81	-0.8
1,497,527	+		BBR_RS16615	0.83	-0.6
1,497,535	-		BBR_RS16615	0.84	-0.6
1,497,555	-		BBR_RS16615	0.85	-1.7
1,497,584	+		BBR_RS16615	0.88	-0.7
1,497,584	+		BBR_RS16615	0.88	-0.3
1,497,621	+				-1.6
1,497,629	-				-1.0
1,497,681	-				-0.4
1,497,692	-				-0.5
1,497,697	+				-0.1
1,497,746	-				+1.1
1,497,903	+		BBR_RS16620	0.23	-1.0
1,497,911	-		BBR_RS16620	0.24	-0.7
1,497,925	-		BBR_RS16620	0.25	-0.4
1,497,959	+		BBR_RS16620	0.30	-1.0
1,498,012	-		BBR_RS16620	0.37	-0.3
1,498,012	-		BBR_RS16620	0.37	+0.0
1,498,041	-		BBR_RS16620	0.40	-0.6
1,498,116	-		BBR_RS16620	0.50	-0.4
1,498,193	-		BBR_RS16620	0.60	-0.5
1,498,221	-		BBR_RS16620	0.63	-0.3
1,498,240	-		BBR_RS16620	0.66	+0.2
1,498,267	+		BBR_RS16620	0.69	-2.2
1,498,388	-		BBR_RS16620	0.85	-0.3
1,498,483	-				-0.4
1,498,513	+				-0.3
1,498,596	+				-0.6
1,498,646	-		BBR_RS16625	0.15	+0.3
1,498,727	-		BBR_RS16625	0.24	+0.2
1,498,773	+		BBR_RS16625	0.30	+0.3
1,498,818	-		BBR_RS16625	0.35	-0.3
1,498,947	-		BBR_RS16625	0.50	-1.9
1,498,958	+		BBR_RS16625	0.52	-1.8
1,498,966	-		BBR_RS16625	0.53	-1.2
1,498,966	-		BBR_RS16625	0.53	-0.7
1,498,983	-		BBR_RS16625	0.55	-0.3
1,498,995	-		BBR_RS16625	0.56	-1.7
1,499,068	-		BBR_RS16625	0.65	-1.4
1,499,087	+		BBR_RS16625	0.67	-1.2
1,499,119	+		BBR_RS16625	0.71	-2.9
1,499,187	-		BBR_RS16625	0.79	-0.5
1,499,215	-		BBR_RS16625	0.82	-0.5
1,499,259	+		BBR_RS16625	0.87	+0.7
1,499,267	-		BBR_RS16625	0.88	+0.6
1,499,267	-		BBR_RS16625	0.88	+0.2
1,499,395	-				-0.2
1,499,423	-				+0.7
1,499,500	+				-0.6