Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16555

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,478,547	+		BBR_RS16545	0.88	+0.5
1,478,635	-				+0.4
1,478,672	+				+0.6
1,478,680	-				-0.3
1,478,680	-				+0.4
1,478,690	-				-0.2
1,478,690	-				-0.3
1,478,747	-				-0.0
1,479,366	+				-0.1
1,479,399	+				+0.5
1,479,415	-				-0.7
1,479,419	+				-0.2
1,479,483	-				-0.2
1,479,485	+				-0.2
1,479,493	-				+0.1
1,480,526	-		BBR_RS16555	0.35	-0.8
1,482,403	+				-0.3
1,482,525	-				-0.3
1,482,527	-				+1.7
1,482,527	-				+0.4
1,482,535	+				-0.1
1,482,545	-				-0.0
1,482,556	-				+0.0
1,482,703	-		BBR_RS16560	0.15	+0.2
1,482,783	+		BBR_RS16560	0.25	-1.3
1,482,790	+		BBR_RS16560	0.26	-1.9
1,482,791	-		BBR_RS16560	0.26	+0.4
1,482,824	-		BBR_RS16560	0.31	+0.2
1,482,826	+		BBR_RS16560	0.31	-0.2
1,482,826	-		BBR_RS16560	0.31	+1.4
1,482,835	+		BBR_RS16560	0.32	-0.9
1,482,857	+		BBR_RS16560	0.35	+0.4
1,482,869	+		BBR_RS16560	0.37	+0.1
1,482,869	+		BBR_RS16560	0.37	-0.1
1,482,879	-		BBR_RS16560	0.38	+0.0
1,482,910	-		BBR_RS16560	0.42	+0.1
1,482,916	-		BBR_RS16560	0.43	+0.4
1,482,927	-		BBR_RS16560	0.44	-0.9
1,482,976	-		BBR_RS16560	0.51	+1.0
1,482,978	+		BBR_RS16560	0.51	+0.1
1,483,041	+		BBR_RS16560	0.60	+0.1
1,483,041	+		BBR_RS16560	0.60	+0.3
1,483,049	-		BBR_RS16560	0.61	-0.9
1,483,049	-		BBR_RS16560	0.61	+0.4
1,483,126	+		BBR_RS16560	0.71	-0.2
1,483,136	+		BBR_RS16560	0.72	+0.0
1,483,141	-		BBR_RS16560	0.73	+0.5
1,483,214	-		BBR_RS16560	0.83	-1.2
1,483,315	-				-0.3
1,483,325	-				+0.2
1,483,348	+				-0.1
1,483,348	+				-0.0