Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16020

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,348,427	-		BBR_RS16010	0.39	-1.0
1,348,429	-		BBR_RS16010	0.39	+0.5
1,348,485	+		BBR_RS16010	0.49	+0.8
1,348,485	+		BBR_RS16010	0.49	+0.0
1,348,491	-		BBR_RS16010	0.51	+0.1
1,348,516	-		BBR_RS16010	0.55	+0.5
1,348,537	+		BBR_RS16010	0.59	+0.5
1,348,692	+		BBR_RS16010	0.88	+0.5
1,348,718	+				-0.0
1,348,756	-				+0.2
1,348,783	-				-1.0
1,348,877	+				-0.6
1,348,885	-				-0.9
1,348,937	+				+0.4
1,348,991	-				+0.5
1,349,174	+		BBR_RS16015	0.29	+1.0
1,349,174	+		BBR_RS16015	0.29	-0.1
1,349,174	+		BBR_RS16015	0.29	+1.0
1,349,182	-		BBR_RS16015	0.32	+0.1
1,349,245	-		BBR_RS16015	0.52	+1.3
1,349,286	-		BBR_RS16015	0.66	-0.5
1,349,295	+		BBR_RS16015	0.69	+0.5
1,349,312	-		BBR_RS16015	0.75	+1.7
1,349,344	+		BBR_RS16015	0.85	+0.2
1,349,375	+				+1.0
1,349,381	-				-1.1
1,349,387	+				-0.2
1,349,387	+				+0.1
1,349,391	-				-0.0
1,349,476	-		BBR_RS16020	0.25	-0.5
1,349,491	-		BBR_RS16020	0.29	+0.1
1,349,564	-		BBR_RS16020	0.50	-0.5
1,349,599	+		BBR_RS16020	0.60	-0.2
1,349,756	+				+0.4
1,349,770	-				-0.7
1,349,780	-				-0.3
1,349,897	+				-0.0
1,349,923	+		BBR_RS16025	0.11	+0.5
1,349,980	-		BBR_RS16025	0.25	+0.6
1,349,982	+		BBR_RS16025	0.26	+0.4
1,350,009	+		BBR_RS16025	0.32	+0.1
1,350,021	+		BBR_RS16025	0.35	+0.0
1,350,062	-		BBR_RS16025	0.45	+0.1
1,350,120	+		BBR_RS16025	0.59	-0.2
1,350,120	+		BBR_RS16025	0.59	-0.1
1,350,128	-		BBR_RS16025	0.61	-0.3
1,350,128	-		BBR_RS16025	0.61	+0.5
1,350,128	-		BBR_RS16025	0.61	+0.2
1,350,176	+		BBR_RS16025	0.72	-0.2
1,350,179	-		BBR_RS16025	0.73	+0.3
1,350,185	+		BBR_RS16025	0.75	+0.8
1,350,207	-		BBR_RS16025	0.80	-0.4
1,350,230	-		BBR_RS16025	0.86	+0.0
1,350,312	+				+0.0
1,350,365	-				-0.2
1,350,365	-				+0.4
1,350,365	-				-0.5
1,350,372	-				+0.7
1,350,392	+				+1.6
1,350,443	-				-0.5
1,350,452	+				+0.0
1,350,452	+				+0.2
1,350,460	-				+0.6
1,350,513	+				+0.2
1,350,532	+				+0.3
1,350,558	+				+0.9
1,350,647	-				-0.5
1,350,647	-				-1.0
1,350,657	+				+0.3
1,350,662	+				+0.1
1,350,670	-				+0.2
1,350,701	+				-0.1
1,350,708	-				+0.4