Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15440

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,234,923	+		BBR_RS15435	0.52	-0.2
1,235,122	+		BBR_RS15435	0.65	+0.7
1,235,130	+		BBR_RS15435	0.65	+2.0
1,235,130	-		BBR_RS15435	0.65	+0.3
1,235,285	+		BBR_RS15435	0.76	-1.1
1,235,330	-		BBR_RS15435	0.79	+1.3
1,235,478	+		BBR_RS15435	0.88	+0.7
1,235,486	-		BBR_RS15435	0.89	-1.8
1,235,521	+				-0.2
1,235,560	-				-0.3
1,235,656	+				+0.5
1,235,658	+				-0.9
1,235,910	+		BBR_RS15440	0.25	-0.7
1,235,913	+		BBR_RS15440	0.25	-1.4
1,235,944	+		BBR_RS15440	0.29	-0.7
1,235,944	+		BBR_RS15440	0.29	+0.6
1,235,946	+		BBR_RS15440	0.29	-0.3
1,235,989	-		BBR_RS15440	0.33	+1.6
1,236,001	+		BBR_RS15440	0.34	+1.0
1,236,042	+		BBR_RS15440	0.39	-1.4
1,236,131	-		BBR_RS15440	0.48	+1.0
1,236,186	+		BBR_RS15440	0.54	-1.0
1,236,281	+		BBR_RS15440	0.64	-0.8
1,236,294	-		BBR_RS15440	0.65	+0.3
1,236,379	+		BBR_RS15440	0.74	+0.7
1,236,454	+		BBR_RS15440	0.82	-0.4
1,236,653	+				+0.2
1,236,796	+				+1.2
1,236,917	-		BBR_RS15445	0.17	+0.4
1,236,923	+		BBR_RS15445	0.18	+0.6
1,236,937	-		BBR_RS15445	0.19	-0.3
1,236,956	+		BBR_RS15445	0.22	+1.6
1,237,007	+		BBR_RS15445	0.28	+0.1
1,237,007	+		BBR_RS15445	0.28	-0.8
1,237,030	-		BBR_RS15445	0.31	+0.6
1,237,062	-		BBR_RS15445	0.35	-0.2
1,237,187	-		BBR_RS15445	0.50	+0.1
1,237,192	-		BBR_RS15445	0.50	+1.0
1,237,192	-		BBR_RS15445	0.50	+0.1
1,237,194	+		BBR_RS15445	0.51	-1.1
1,237,281	-		BBR_RS15445	0.61	+0.8
1,237,308	+		BBR_RS15445	0.64	+0.8
1,237,405	-		BBR_RS15445	0.76	+0.3
1,237,426	-		BBR_RS15445	0.79	+1.3
1,237,426	-		BBR_RS15445	0.79	+0.7
1,237,496	-		BBR_RS15445	0.87	-0.5
1,237,529	-				+0.2
1,237,573	+				+0.4
1,237,596	-				-0.5
1,237,606	-				+0.2
1,237,623	-				+1.6
1,237,625	+				-0.1