Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15425

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,231,764	-		BBR_RS15420	0.78	-0.1
1,231,774	+		BBR_RS15420	0.79	+0.0
1,231,788	-		BBR_RS15420	0.79	-0.3
1,231,806	-		BBR_RS15420	0.80	+0.1
1,231,812	+		BBR_RS15420	0.80	+0.2
1,231,888	+		BBR_RS15420	0.82	-0.1
1,231,999	+		BBR_RS15420	0.86	+0.0
1,232,021	-		BBR_RS15420	0.86	-0.0
1,232,035	-		BBR_RS15420	0.87	+1.1
1,232,137	+				+0.1
1,232,160	+				-0.3
1,232,166	-				+1.7
1,232,216	+				-0.5
1,232,216	+				+0.1
1,232,307	+				-0.4
1,232,360	-				+0.7
1,232,364	+				-0.2
1,232,428	+				+0.4
1,232,428	+				-0.7
1,232,453	-				-1.2
1,232,462	-				-0.1
1,232,646	+				-0.2
1,232,646	+				-0.3
1,232,882	+		BBR_RS15425	0.12	+0.7
1,232,923	-		BBR_RS15425	0.17	-0.0
1,233,009	-		BBR_RS15425	0.26	+1.3
1,233,156	-		BBR_RS15425	0.41	+0.5
1,233,156	-		BBR_RS15425	0.41	-0.0
1,233,333	-		BBR_RS15425	0.59	-1.3
1,233,535	+		BBR_RS15425	0.80	+1.7
1,233,622	+		BBR_RS15425	0.89	-1.0
1,233,702	+				-0.1
1,234,025	+		BBR_RS15430	0.72	+0.3
1,234,138	-				+0.3
1,234,570	+		BBR_RS15435	0.28	+0.2
1,234,578	-		BBR_RS15435	0.29	-0.0
1,234,667	+		BBR_RS15435	0.35	+0.2
1,234,667	+		BBR_RS15435	0.35	-0.7