Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14480

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,022,492	-		BBR_RS14475	0.63	-0.6
1,022,555	-		BBR_RS14475	0.66	+0.2
1,022,660	-		BBR_RS14475	0.70	-0.8
1,022,669	+		BBR_RS14475	0.71	-1.1
1,022,669	+		BBR_RS14475	0.71	-0.3
1,022,684	+		BBR_RS14475	0.71	-1.7
1,022,769	+		BBR_RS14475	0.75	-2.5
1,022,806	+		BBR_RS14475	0.76	-0.9
1,022,888	+		BBR_RS14475	0.80	-0.5
1,022,889	+		BBR_RS14475	0.80	-0.6
1,022,944	-		BBR_RS14475	0.82	+0.3
1,022,973	+		BBR_RS14475	0.83	-0.2
1,023,011	+		BBR_RS14475	0.85	+0.6
1,023,011	+		BBR_RS14475	0.85	+0.2
1,023,013	+		BBR_RS14475	0.85	+0.5
1,023,013	+		BBR_RS14475	0.85	-2.4
1,023,094	-		BBR_RS14475	0.89	-0.3
1,023,194	+				-0.6
1,023,239	-				+0.3
1,023,302	+				+0.1
1,023,341	+				-0.2
1,023,416	+				+0.1
1,023,416	+				+1.3
1,023,417	-				+0.7
1,023,423	-				-0.6
1,023,435	-				+0.8
1,023,528	+				-0.7
1,023,528	+				-0.4
1,023,528	+				-0.9
1,023,602	-		BBR_RS14480	0.14	-0.1
1,023,650	+		BBR_RS14480	0.20	-0.0
1,023,711	-		BBR_RS14480	0.26	+0.5
1,023,757	-		BBR_RS14480	0.32	-0.9
1,023,800	-		BBR_RS14480	0.37	-0.5
1,023,822	+		BBR_RS14480	0.39	+0.4
1,023,822	+		BBR_RS14480	0.39	-1.3
1,023,822	+		BBR_RS14480	0.39	-0.3
1,023,822	+		BBR_RS14480	0.39	-0.4
1,023,830	-		BBR_RS14480	0.40	-0.3
1,023,830	-		BBR_RS14480	0.40	-1.0
1,023,830	-		BBR_RS14480	0.40	-0.6
1,023,830	-		BBR_RS14480	0.40	-0.7
1,023,833	+		BBR_RS14480	0.40	-0.5
1,023,907	+		BBR_RS14480	0.49	+0.3
1,023,923	-		BBR_RS14480	0.50	+0.2
1,024,019	+		BBR_RS14480	0.61	-1.5
1,024,089	+		BBR_RS14480	0.69	-0.8
1,024,116	-		BBR_RS14480	0.72	+0.2
1,024,178	-		BBR_RS14480	0.79	-0.6
1,024,250	+		BBR_RS14480	0.88	-0.8
1,024,258	-		BBR_RS14480	0.88	-0.9
1,024,299	-				+0.0
1,024,349	-				+0.2
1,024,361	-				-0.6
1,024,383	-				-0.1
1,024,391	-				-0.3
1,024,437	-				-0.2
1,024,444	+				+0.2
1,024,494	-				-0.1
1,024,569	-				-0.1
1,024,569	-				-0.1
1,024,595	+				+0.1
1,024,605	-		BBR_RS14485	0.10	-0.2
1,024,617	+		BBR_RS14485	0.12	-1.3
1,024,617	+		BBR_RS14485	0.12	+0.3
1,024,617	+		BBR_RS14485	0.12	+0.1
1,024,692	+		BBR_RS14485	0.24	+0.7
1,024,699	-		BBR_RS14485	0.25	+0.5
1,024,726	+		BBR_RS14485	0.29	+0.2
1,024,838	+		BBR_RS14485	0.47	+0.3
1,024,905	+		BBR_RS14485	0.58	+0.3
1,024,994	-		BBR_RS14485	0.72	+0.3
1,024,999	-		BBR_RS14485	0.72	-0.5
1,025,071	-		BBR_RS14485	0.84	+0.2
1,025,071	-		BBR_RS14485	0.84	+0.0
1,025,078	+		BBR_RS14485	0.85	+0.1
1,025,088	+		BBR_RS14485	0.86	-0.1
1,025,096	-		BBR_RS14485	0.88	-0.7
1,025,096	-		BBR_RS14485	0.88	+0.0
1,025,147	-				-0.5
1,025,159	+				+0.5
1,025,219	+				+0.4
1,025,222	-				+0.4
1,025,262	+				-0.3
1,025,270	-				-0.3
1,025,298	-				-0.0
1,025,326	-		BBR_RS14490	0.12	-0.1
1,025,326	-		BBR_RS14490	0.12	+0.5
1,025,342	+		BBR_RS14490	0.13	+0.4