Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14475

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
1,020,511	+		BBR_RS14470	0.11	-1.0
1,020,534	+		BBR_RS14470	0.21	+0.8
1,020,542	-		BBR_RS14470	0.25	+0.8
1,020,570	+		BBR_RS14470	0.37	+0.0
1,020,576	-		BBR_RS14470	0.39	+0.7
1,020,578	-		BBR_RS14470	0.40	+1.1
1,020,586	+		BBR_RS14470	0.44	+0.7
1,020,613	+		BBR_RS14470	0.55	+0.9
1,020,618	-		BBR_RS14470	0.58	-0.6
1,020,618	-		BBR_RS14470	0.58	-0.0
1,020,620	+		BBR_RS14470	0.58	+0.2
1,020,623	-		BBR_RS14470	0.60	+0.7
1,020,634	+		BBR_RS14470	0.65	+0.1
1,020,763	+				+0.4
1,020,767	+				+0.8
1,020,775	-				+1.8
1,020,911	+				-0.2
1,020,911	+				-0.4
1,021,051	+				-0.2
1,021,084	-				-1.1
1,021,118	+				-0.6
1,021,125	+				+0.1
1,021,125	+				+0.7
1,021,198	+				-1.8
1,021,245	-		BBR_RS14475	0.11	+0.0
1,021,294	-		BBR_RS14475	0.13	-1.0
1,021,470	+		BBR_RS14475	0.20	-1.3
1,021,484	+		BBR_RS14475	0.21	+0.0
1,021,509	+		BBR_RS14475	0.22	-1.1
1,021,567	+		BBR_RS14475	0.24	+0.2
1,021,567	+		BBR_RS14475	0.24	-0.8
1,021,572	+		BBR_RS14475	0.24	-0.8
1,021,608	-		BBR_RS14475	0.26	-2.0
1,021,612	+		BBR_RS14475	0.26	-0.2
1,021,621	+		BBR_RS14475	0.27	-1.1
1,021,700	+		BBR_RS14475	0.30	-0.8
1,021,744	+		BBR_RS14475	0.32	-0.3
1,021,749	+		BBR_RS14475	0.32	-1.2
1,021,764	+		BBR_RS14475	0.33	-1.2
1,021,847	-		BBR_RS14475	0.36	-0.4
1,021,847	-		BBR_RS14475	0.36	+1.2
1,021,900	-		BBR_RS14475	0.38	-0.8
1,021,926	-		BBR_RS14475	0.39	-1.4
1,022,080	+		BBR_RS14475	0.46	+0.9
1,022,090	+		BBR_RS14475	0.46	-1.6
1,022,104	+		BBR_RS14475	0.47	-1.7
1,022,114	+		BBR_RS14475	0.47	+1.3
1,022,130	+		BBR_RS14475	0.48	+0.9
1,022,138	-		BBR_RS14475	0.48	-0.3
1,022,250	+		BBR_RS14475	0.53	-1.2
1,022,339	+		BBR_RS14475	0.57	-1.3
1,022,344	+		BBR_RS14475	0.57	-1.4
1,022,346	+		BBR_RS14475	0.57	-0.3
1,022,359	-		BBR_RS14475	0.58	-0.5
1,022,359	-		BBR_RS14475	0.58	-0.5
1,022,397	+		BBR_RS14475	0.59	-0.8
1,022,416	-		BBR_RS14475	0.60	+0.7
1,022,445	+		BBR_RS14475	0.61	+0.0
1,022,492	-		BBR_RS14475	0.63	-0.6
1,022,555	-		BBR_RS14475	0.66	+0.2
1,022,660	-		BBR_RS14475	0.70	-0.8
1,022,669	+		BBR_RS14475	0.71	-1.1
1,022,669	+		BBR_RS14475	0.71	-0.3
1,022,684	+		BBR_RS14475	0.71	-1.7
1,022,769	+		BBR_RS14475	0.75	-2.5
1,022,806	+		BBR_RS14475	0.76	-0.9
1,022,888	+		BBR_RS14475	0.80	-0.5
1,022,889	+		BBR_RS14475	0.80	-0.6
1,022,944	-		BBR_RS14475	0.82	+0.3
1,022,973	+		BBR_RS14475	0.83	-0.2
1,023,011	+		BBR_RS14475	0.85	+0.6
1,023,011	+		BBR_RS14475	0.85	+0.2
1,023,013	+		BBR_RS14475	0.85	+0.5
1,023,013	+		BBR_RS14475	0.85	-2.4
1,023,094	-		BBR_RS14475	0.89	-0.3
1,023,194	+				-0.6
1,023,239	-				+0.3
1,023,302	+				+0.1
1,023,341	+				-0.2
1,023,416	+				+0.1
1,023,416	+				+1.3
1,023,417	-				+0.7
1,023,423	-				-0.6
1,023,435	-				+0.8
1,023,528	+				-0.7
1,023,528	+				-0.4
1,023,528	+				-0.9
1,023,602	-		BBR_RS14480	0.14	-0.1
1,023,650	+		BBR_RS14480	0.20	-0.0
1,023,711	-		BBR_RS14480	0.26	+0.5
1,023,757	-		BBR_RS14480	0.32	-0.9
1,023,800	-		BBR_RS14480	0.37	-0.5
1,023,822	+		BBR_RS14480	0.39	+0.4
1,023,822	+		BBR_RS14480	0.39	-1.3
1,023,822	+		BBR_RS14480	0.39	-0.3
1,023,822	+		BBR_RS14480	0.39	-0.4
1,023,830	-		BBR_RS14480	0.40	-0.3
1,023,830	-		BBR_RS14480	0.40	-1.0
1,023,830	-		BBR_RS14480	0.40	-0.6
1,023,830	-		BBR_RS14480	0.40	-0.7
1,023,833	+		BBR_RS14480	0.40	-0.5
1,023,907	+		BBR_RS14480	0.49	+0.3
1,023,923	-		BBR_RS14480	0.50	+0.2
1,024,019	+		BBR_RS14480	0.61	-1.5
1,024,089	+		BBR_RS14480	0.69	-0.8
1,024,116	-		BBR_RS14480	0.72	+0.2
1,024,178	-		BBR_RS14480	0.79	-0.6
1,024,250	+		BBR_RS14480	0.88	-0.8
1,024,258	-		BBR_RS14480	0.88	-0.9
1,024,299	-				+0.0
1,024,349	-				+0.2
1,024,361	-				-0.6