Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14190

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14185 and BBR_RS14190 are separated by 203 nucleotidesBBR_RS14190 and BBR_RS14200 are separated by 260 nucleotidesBBR_RS14200 and BBR_RS14205 are separated by 45 nucleotides BBR_RS14185: BBR_RS14185 - cell division protein FtsK, at 956,581 to 958,299 _RS14185 BBR_RS14190: BBR_RS14190 - transcriptional regulator, at 958,503 to 959,837 _RS14190 BBR_RS14200: BBR_RS14200 - WhiB family transcriptional regulator, at 960,098 to 960,397 _RS14200 BBR_RS14205: BBR_RS14205 - hypothetical protein, at 960,443 to 963,535 _RS14205 Position (kb) 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 957.504 kb on + strand, within BBR_RS14185at 957.512 kb on - strand, within BBR_RS14185at 957.602 kb on + strand, within BBR_RS14185at 957.602 kb on + strand, within BBR_RS14185at 957.656 kb on - strand, within BBR_RS14185at 957.681 kb on - strand, within BBR_RS14185at 957.692 kb on + strand, within BBR_RS14185at 957.702 kb on + strand, within BBR_RS14185at 957.723 kb on - strand, within BBR_RS14185at 957.744 kb on - strand, within BBR_RS14185at 957.746 kb on + strand, within BBR_RS14185at 957.746 kb on + strand, within BBR_RS14185at 957.754 kb on - strand, within BBR_RS14185at 957.772 kb on - strand, within BBR_RS14185at 957.824 kb on - strand, within BBR_RS14185at 957.824 kb on - strand, within BBR_RS14185at 957.829 kb on - strand, within BBR_RS14185at 957.843 kb on - strand, within BBR_RS14185at 957.924 kb on + strand, within BBR_RS14185at 957.966 kb on - strand, within BBR_RS14185at 957.981 kb on + strand, within BBR_RS14185at 957.981 kb on + strand, within BBR_RS14185at 957.981 kb on + strand, within BBR_RS14185at 958.027 kb on + strand, within BBR_RS14185at 958.074 kb on - strand, within BBR_RS14185at 958.105 kb on - strand, within BBR_RS14185at 958.118 kb on - strand, within BBR_RS14185at 958.187 kb on - strandat 958.198 kb on + strandat 958.198 kb on + strandat 958.206 kb on - strandat 958.239 kb on + strandat 958.266 kb on + strandat 958.349 kb on - strandat 958.413 kb on + strandat 958.431 kb on + strandat 958.431 kb on + strandat 958.550 kb on - strandat 958.595 kb on + strandat 958.595 kb on + strandat 958.603 kb on - strandat 958.603 kb on - strandat 958.648 kb on - strand, within BBR_RS14190at 958.751 kb on - strand, within BBR_RS14190at 958.817 kb on - strand, within BBR_RS14190at 958.817 kb on - strand, within BBR_RS14190at 958.904 kb on - strand, within BBR_RS14190at 958.944 kb on - strand, within BBR_RS14190at 959.004 kb on + strand, within BBR_RS14190at 959.012 kb on - strand, within BBR_RS14190at 959.020 kb on - strand, within BBR_RS14190at 959.024 kb on + strand, within BBR_RS14190at 959.024 kb on - strand, within BBR_RS14190at 959.029 kb on + strand, within BBR_RS14190at 959.093 kb on - strand, within BBR_RS14190at 959.119 kb on + strand, within BBR_RS14190at 959.119 kb on + strand, within BBR_RS14190at 959.119 kb on + strand, within BBR_RS14190at 959.176 kb on - strand, within BBR_RS14190at 959.176 kb on - strand, within BBR_RS14190at 959.185 kb on - strand, within BBR_RS14190at 959.194 kb on + strand, within BBR_RS14190at 959.205 kb on + strand, within BBR_RS14190at 959.205 kb on + strand, within BBR_RS14190at 959.280 kb on - strand, within BBR_RS14190at 959.280 kb on - strand, within BBR_RS14190at 959.282 kb on + strand, within BBR_RS14190at 959.358 kb on + strand, within BBR_RS14190at 959.373 kb on - strand, within BBR_RS14190at 959.394 kb on + strand, within BBR_RS14190at 959.427 kb on + strand, within BBR_RS14190at 959.444 kb on + strand, within BBR_RS14190at 959.444 kb on - strand, within BBR_RS14190at 959.450 kb on + strand, within BBR_RS14190at 959.452 kb on - strand, within BBR_RS14190at 959.481 kb on - strand, within BBR_RS14190at 959.491 kb on - strand, within BBR_RS14190at 959.527 kb on - strand, within BBR_RS14190at 959.575 kb on + strand, within BBR_RS14190at 959.597 kb on + strand, within BBR_RS14190at 959.597 kb on + strand, within BBR_RS14190at 959.605 kb on - strand, within BBR_RS14190at 959.612 kb on + strand, within BBR_RS14190at 959.620 kb on - strand, within BBR_RS14190at 959.637 kb on - strand, within BBR_RS14190at 959.652 kb on - strand, within BBR_RS14190at 959.688 kb on - strand, within BBR_RS14190at 959.735 kb on - strandat 959.758 kb on - strandat 959.908 kb on - strandat 959.929 kb on - strandat 959.932 kb on + strandat 959.964 kb on - strandat 960.142 kb on + strand, within BBR_RS14200at 960.142 kb on + strand, within BBR_RS14200at 960.150 kb on - strand, within BBR_RS14200at 960.154 kb on + strand, within BBR_RS14200at 960.154 kb on + strand, within BBR_RS14200at 960.162 kb on - strand, within BBR_RS14200at 960.162 kb on - strand, within BBR_RS14200at 960.195 kb on + strand, within BBR_RS14200at 960.205 kb on + strand, within BBR_RS14200at 960.342 kb on + strand, within BBR_RS14200at 960.350 kb on - strand, within BBR_RS14200at 960.379 kb on + strandat 960.397 kb on + strandat 960.439 kb on - strandat 960.516 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
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957,504 + BBR_RS14185 0.54 +0.1
957,512 - BBR_RS14185 0.54 -0.5
957,602 + BBR_RS14185 0.59 -0.1
957,602 + BBR_RS14185 0.59 +0.4
957,656 - BBR_RS14185 0.63 +0.5
957,681 - BBR_RS14185 0.64 +0.9
957,692 + BBR_RS14185 0.65 -0.7
957,702 + BBR_RS14185 0.65 +0.4
957,723 - BBR_RS14185 0.66 -0.3
957,744 - BBR_RS14185 0.68 +0.4
957,746 + BBR_RS14185 0.68 +0.1
957,746 + BBR_RS14185 0.68 -0.4
957,754 - BBR_RS14185 0.68 +0.1
957,772 - BBR_RS14185 0.69 +1.3
957,824 - BBR_RS14185 0.72 +0.0
957,824 - BBR_RS14185 0.72 -1.1
957,829 - BBR_RS14185 0.73 +0.0
957,843 - BBR_RS14185 0.73 -0.0
957,924 + BBR_RS14185 0.78 +0.8
957,966 - BBR_RS14185 0.81 +0.2
957,981 + BBR_RS14185 0.81 +0.2
957,981 + BBR_RS14185 0.81 -0.3
957,981 + BBR_RS14185 0.81 -0.8
958,027 + BBR_RS14185 0.84 +0.4
958,074 - BBR_RS14185 0.87 +0.0
958,105 - BBR_RS14185 0.89 -0.2
958,118 - BBR_RS14185 0.89 -0.0
958,187 - +1.0
958,198 + +0.2
958,198 + +0.7
958,206 - -0.7
958,239 + +0.2
958,266 + +0.9
958,349 - -0.0
958,413 + +0.1
958,431 + -0.4
958,431 + +0.4
958,550 - +0.3
958,595 + -2.0
958,595 + -1.2
958,603 - -0.4
958,603 - -2.1
958,648 - BBR_RS14190 0.11 -2.9
958,751 - BBR_RS14190 0.19 -1.8
958,817 - BBR_RS14190 0.24 -1.2
958,817 - BBR_RS14190 0.24 -2.4
958,904 - BBR_RS14190 0.30 -0.5
958,944 - BBR_RS14190 0.33 -1.2
959,004 + BBR_RS14190 0.38 -0.9
959,012 - BBR_RS14190 0.38 -0.6
959,020 - BBR_RS14190 0.39 -1.0
959,024 + BBR_RS14190 0.39 -1.9
959,024 - BBR_RS14190 0.39 -2.0
959,029 + BBR_RS14190 0.39 -0.9
959,093 - BBR_RS14190 0.44 -1.1
959,119 + BBR_RS14190 0.46 -0.7
959,119 + BBR_RS14190 0.46 -1.1
959,119 + BBR_RS14190 0.46 -0.3
959,176 - BBR_RS14190 0.50 -1.3
959,176 - BBR_RS14190 0.50 -0.9
959,185 - BBR_RS14190 0.51 -1.8
959,194 + BBR_RS14190 0.52 -1.6
959,205 + BBR_RS14190 0.53 -1.4
959,205 + BBR_RS14190 0.53 -3.4
959,280 - BBR_RS14190 0.58 -1.3
959,280 - BBR_RS14190 0.58 -0.7
959,282 + BBR_RS14190 0.58 -1.8
959,358 + BBR_RS14190 0.64 -1.0
959,373 - BBR_RS14190 0.65 -1.5
959,394 + BBR_RS14190 0.67 -2.0
959,427 + BBR_RS14190 0.69 -0.2
959,444 + BBR_RS14190 0.70 -1.8
959,444 - BBR_RS14190 0.70 -1.5
959,450 + BBR_RS14190 0.71 -1.0
959,452 - BBR_RS14190 0.71 -1.3
959,481 - BBR_RS14190 0.73 -0.0
959,491 - BBR_RS14190 0.74 -1.4
959,527 - BBR_RS14190 0.77 -1.2
959,575 + BBR_RS14190 0.80 -0.1
959,597 + BBR_RS14190 0.82 -0.5
959,597 + BBR_RS14190 0.82 +0.1
959,605 - BBR_RS14190 0.83 -0.3
959,612 + BBR_RS14190 0.83 -0.8
959,620 - BBR_RS14190 0.84 -1.4
959,637 - BBR_RS14190 0.85 +0.1
959,652 - BBR_RS14190 0.86 -0.1
959,688 - BBR_RS14190 0.89 -0.3
959,735 - +0.0
959,758 - -1.1
959,908 - -0.6
959,929 - -0.3
959,932 + +0.0
959,964 - -0.5
960,142 + BBR_RS14200 0.15 +1.9
960,142 + BBR_RS14200 0.15 -0.9
960,150 - BBR_RS14200 0.17 +0.6
960,154 + BBR_RS14200 0.19 -1.3
960,154 + BBR_RS14200 0.19 -0.1
960,162 - BBR_RS14200 0.21 +0.8
960,162 - BBR_RS14200 0.21 -0.3
960,195 + BBR_RS14200 0.32 -0.7
960,205 + BBR_RS14200 0.36 -0.7
960,342 + BBR_RS14200 0.81 -2.0
960,350 - BBR_RS14200 0.84 +0.5
960,379 + -0.3
960,397 + +0.8
960,439 - -3.5
960,516 + +1.3

Or see this region's nucleotide sequence