Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13805

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13795 and BBR_RS13800 are separated by 82 nucleotidesBBR_RS13800 and BBR_RS13805 are separated by 132 nucleotidesBBR_RS13805 and BBR_RS13810 are separated by 119 nucleotides BBR_RS13795: BBR_RS13795 - ABC transporter ATP-binding protein, at 868,073 to 868,858 _RS13795 BBR_RS13800: BBR_RS13800 - hypothetical protein, at 868,941 to 869,120 _RS13800 BBR_RS13805: BBR_RS13805 - hypothetical protein, at 869,253 to 871,502 _RS13805 BBR_RS13810: BBR_RS13810 - hypothetical protein, at 871,622 to 874,924 _RS13810 Position (kb) 869 870 871 872Strain fitness (log2 ratio) -3 -2 -1 0 1at 868.271 kb on + strand, within BBR_RS13795at 868.292 kb on + strand, within BBR_RS13795at 868.316 kb on + strand, within BBR_RS13795at 868.324 kb on - strand, within BBR_RS13795at 868.326 kb on - strand, within BBR_RS13795at 868.398 kb on + strand, within BBR_RS13795at 868.457 kb on + strand, within BBR_RS13795at 868.495 kb on - strand, within BBR_RS13795at 868.512 kb on - strand, within BBR_RS13795at 868.573 kb on - strand, within BBR_RS13795at 868.590 kb on + strand, within BBR_RS13795at 868.624 kb on + strand, within BBR_RS13795at 868.630 kb on + strand, within BBR_RS13795at 868.630 kb on + strand, within BBR_RS13795at 868.632 kb on - strand, within BBR_RS13795at 868.642 kb on + strand, within BBR_RS13795at 868.642 kb on + strand, within BBR_RS13795at 868.675 kb on - strand, within BBR_RS13795at 868.745 kb on - strand, within BBR_RS13795at 868.795 kb on + strandat 868.803 kb on - strandat 868.836 kb on + strandat 868.852 kb on - strandat 868.863 kb on - strandat 868.867 kb on + strandat 868.890 kb on + strandat 868.891 kb on + strandat 868.904 kb on + strandat 868.912 kb on - strandat 868.912 kb on - strandat 868.912 kb on - strandat 868.924 kb on + strandat 868.930 kb on + strandat 868.948 kb on + strandat 868.948 kb on + strandat 869.011 kb on - strand, within BBR_RS13800at 869.050 kb on + strand, within BBR_RS13800at 869.054 kb on + strand, within BBR_RS13800at 869.063 kb on - strand, within BBR_RS13800at 869.067 kb on + strand, within BBR_RS13800at 869.075 kb on - strand, within BBR_RS13800at 869.093 kb on + strand, within BBR_RS13800at 869.118 kb on - strandat 869.126 kb on + strandat 869.128 kb on + strandat 869.138 kb on - strandat 869.138 kb on - strandat 869.175 kb on - strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.259 kb on - strandat 869.259 kb on - strandat 869.259 kb on - strandat 869.268 kb on - strandat 869.269 kb on - strandat 869.269 kb on - strandat 869.269 kb on - strandat 869.999 kb on - strand, within BBR_RS13805at 870.044 kb on - strand, within BBR_RS13805at 870.840 kb on - strand, within BBR_RS13805at 871.447 kb on + strandat 871.479 kb on - strandat 871.495 kb on + strandat 871.495 kb on + strandat 871.526 kb on - strandat 871.659 kb on - strandat 871.666 kb on + strandat 871.674 kb on - strandat 871.691 kb on + strandat 871.738 kb on + strandat 871.776 kb on - strandat 871.816 kb on + strandat 871.835 kb on - strandat 871.861 kb on + strandat 871.861 kb on + strandat 871.898 kb on - strandat 871.922 kb on + strandat 871.957 kb on - strand, within BBR_RS13810at 871.976 kb on + strand, within BBR_RS13810at 872.037 kb on + strand, within BBR_RS13810at 872.042 kb on + strand, within BBR_RS13810at 872.068 kb on - strand, within BBR_RS13810at 872.068 kb on - strand, within BBR_RS13810at 872.068 kb on - strand, within BBR_RS13810at 872.100 kb on - strand, within BBR_RS13810at 872.101 kb on - strand, within BBR_RS13810at 872.111 kb on + strand, within BBR_RS13810at 872.111 kb on + strand, within BBR_RS13810at 872.112 kb on + strand, within BBR_RS13810at 872.144 kb on - strand, within BBR_RS13810at 872.161 kb on + strand, within BBR_RS13810at 872.169 kb on - strand, within BBR_RS13810at 872.184 kb on + strand, within BBR_RS13810at 872.184 kb on + strand, within BBR_RS13810at 872.192 kb on - strand, within BBR_RS13810at 872.246 kb on - strand, within BBR_RS13810at 872.314 kb on - strand, within BBR_RS13810at 872.314 kb on - strand, within BBR_RS13810at 872.356 kb on - strand, within BBR_RS13810at 872.362 kb on + strand, within BBR_RS13810at 872.404 kb on + strand, within BBR_RS13810at 872.420 kb on + strand, within BBR_RS13810at 872.420 kb on + strand, within BBR_RS13810at 872.441 kb on + strand, within BBR_RS13810at 872.494 kb on + strand, within BBR_RS13810

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
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868,271 + BBR_RS13795 0.25 +0.8
868,292 + BBR_RS13795 0.28 +0.2
868,316 + BBR_RS13795 0.31 -1.3
868,324 - BBR_RS13795 0.32 +0.2
868,326 - BBR_RS13795 0.32 +0.3
868,398 + BBR_RS13795 0.41 -0.2
868,457 + BBR_RS13795 0.49 +0.0
868,495 - BBR_RS13795 0.54 +0.0
868,512 - BBR_RS13795 0.56 -0.1
868,573 - BBR_RS13795 0.64 +0.3
868,590 + BBR_RS13795 0.66 +1.3
868,624 + BBR_RS13795 0.70 +0.3
868,630 + BBR_RS13795 0.71 -0.0
868,630 + BBR_RS13795 0.71 -0.2
868,632 - BBR_RS13795 0.71 +0.5
868,642 + BBR_RS13795 0.72 -0.5
868,642 + BBR_RS13795 0.72 +0.2
868,675 - BBR_RS13795 0.77 -0.5
868,745 - BBR_RS13795 0.85 -0.0
868,795 + +0.2
868,803 - -1.0
868,836 + +0.4
868,852 - +1.3
868,863 - +0.5
868,867 + +0.4
868,890 + -0.1
868,891 + +0.8
868,904 + +0.7
868,912 - -0.4
868,912 - -0.4
868,912 - -0.3
868,924 + -0.1
868,930 + +0.5
868,948 + -1.0
868,948 + +0.3
869,011 - BBR_RS13800 0.39 +0.2
869,050 + BBR_RS13800 0.61 -0.1
869,054 + BBR_RS13800 0.63 +0.5
869,063 - BBR_RS13800 0.68 +0.6
869,067 + BBR_RS13800 0.70 +0.6
869,075 - BBR_RS13800 0.74 +0.3
869,093 + BBR_RS13800 0.84 -0.1
869,118 - -1.3
869,126 + +0.0
869,128 + +0.7
869,138 - +0.4
869,138 - -0.1
869,175 - -0.0
869,251 + +0.2
869,251 + +0.0
869,251 + +0.3
869,251 + -0.6
869,251 + -1.2
869,259 - -0.0
869,259 - -0.0
869,259 - +0.4
869,268 - +0.7
869,269 - -0.5
869,269 - -0.1
869,269 - -0.1
869,999 - BBR_RS13805 0.33 -1.6
870,044 - BBR_RS13805 0.35 -0.4
870,840 - BBR_RS13805 0.71 -3.6
871,447 + -0.2
871,479 - -0.5
871,495 + -0.4
871,495 + -0.3
871,526 - +0.6
871,659 - +0.2
871,666 + +0.9
871,674 - -0.4
871,691 + +0.2
871,738 + -0.3
871,776 - +0.2
871,816 + +0.6
871,835 - -0.3
871,861 + -0.9
871,861 + -0.6
871,898 - +0.0
871,922 + +0.3
871,957 - BBR_RS13810 0.10 -0.1
871,976 + BBR_RS13810 0.11 -0.2
872,037 + BBR_RS13810 0.13 -0.2
872,042 + BBR_RS13810 0.13 -0.4
872,068 - BBR_RS13810 0.14 -0.3
872,068 - BBR_RS13810 0.14 +0.2
872,068 - BBR_RS13810 0.14 +0.5
872,100 - BBR_RS13810 0.14 -0.2
872,101 - BBR_RS13810 0.15 +0.6
872,111 + BBR_RS13810 0.15 +1.2
872,111 + BBR_RS13810 0.15 -1.4
872,112 + BBR_RS13810 0.15 +0.3
872,144 - BBR_RS13810 0.16 -1.0
872,161 + BBR_RS13810 0.16 +0.2
872,169 - BBR_RS13810 0.17 -0.1
872,184 + BBR_RS13810 0.17 +0.7
872,184 + BBR_RS13810 0.17 -0.9
872,192 - BBR_RS13810 0.17 +0.4
872,246 - BBR_RS13810 0.19 +0.0
872,314 - BBR_RS13810 0.21 -1.2
872,314 - BBR_RS13810 0.21 +1.3
872,356 - BBR_RS13810 0.22 +0.3
872,362 + BBR_RS13810 0.22 -0.5
872,404 + BBR_RS13810 0.24 +0.3
872,420 + BBR_RS13810 0.24 -0.1
872,420 + BBR_RS13810 0.24 -0.0
872,441 + BBR_RS13810 0.25 +0.1
872,494 + BBR_RS13810 0.26 -0.3

Or see this region's nucleotide sequence