Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13480 and BBR_RS13485 are separated by 583 nucleotides BBR_RS13485 and BBR_RS13490 are separated by 5 nucleotides BBR_RS13490 and BBR_RS13495 are separated by 33 nucleotides
BBR_RS13480: BBR_RS13480 - bile acid:sodium symporter family protein, at 797,478 to 798,551
_RS13480
BBR_RS13485: BBR_RS13485 - 30S ribosomal protein S12, at 799,135 to 799,506
_RS13485
BBR_RS13490: BBR_RS13490 - 30S ribosomal protein S7, at 799,512 to 799,982
_RS13490
BBR_RS13495: BBR_RS13495 - elongation factor G, at 800,016 to 802,139
_RS13495
Position (kb) 799
800 Strain fitness (log2 ratio) -1
0
1 at 798.540 kb on + strand at 798.604 kb on - strand at 798.657 kb on + strand at 798.734 kb on + strand at 798.742 kb on - strand at 798.742 kb on - strand at 798.742 kb on - strand at 798.752 kb on - strand at 798.752 kb on - strand at 798.767 kb on - strand at 798.769 kb on + strand at 798.778 kb on + strand at 798.778 kb on - strand at 798.822 kb on + strand at 798.823 kb on - strand at 798.825 kb on + strand at 798.825 kb on + strand at 798.825 kb on + strand at 798.830 kb on - strand at 798.833 kb on - strand at 798.835 kb on - strand at 798.835 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 799.805 kb on - strand, within BBR_RS13490
Per-strain Table
Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v remove 798,540 + -0.4 798,604 - +0.0 798,657 + +0.1 798,734 + -0.9 798,742 - -0.5 798,742 - -0.1 798,742 - -0.5 798,752 - +0.3 798,752 - -0.1 798,767 - -0.3 798,769 + +0.1 798,778 + -0.1 798,778 - -0.4 798,822 + +0.4 798,823 - +0.9 798,825 + -0.2 798,825 + +0.5 798,825 + +0.7 798,830 - +0.7 798,833 - +0.1 798,835 - -0.9 798,835 - +0.2 798,845 - +0.8 798,845 - -0.4 799,805 - BBR_RS13490 0.62 -1.3
Or see this region's nucleotide sequence