Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13125

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13120 and BBR_RS13125 are separated by 89 nucleotidesBBR_RS13125 and BBR_RS13130 overlap by 11 nucleotidesBBR_RS13130 and BBR_RS13135 overlap by 8 nucleotides BBR_RS13120: BBR_RS13120 - ABC transporter permease, at 719,270 to 720,247 _RS13120 BBR_RS13125: BBR_RS13125 - ABC transporter permease, at 720,337 to 721,230 _RS13125 BBR_RS13130: BBR_RS13130 - ABC transporter ATP-binding protein, at 721,220 to 722,011 _RS13130 BBR_RS13135: BBR_RS13135 - ABC transporter ATP-binding protein, at 722,004 to 722,789 _RS13135 Position (kb) 720 721 722Strain fitness (log2 ratio) -1 0 1at 720.228 kb on + strandat 720.321 kb on - strandat 720.507 kb on + strand, within BBR_RS13125at 720.507 kb on + strand, within BBR_RS13125at 721.197 kb on + strandat 721.202 kb on + strandat 721.616 kb on + strand, within BBR_RS13130at 721.790 kb on + strand, within BBR_RS13130at 721.979 kb on - strandat 721.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
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720,228 + -0.2
720,321 - -0.3
720,507 + BBR_RS13125 0.19 -0.9
720,507 + BBR_RS13125 0.19 +1.3
721,197 + -0.4
721,202 + -0.2
721,616 + BBR_RS13130 0.50 -0.5
721,790 + BBR_RS13130 0.72 +1.0
721,979 - +0.0
721,997 - -0.5

Or see this region's nucleotide sequence