Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12900 and BBR_RS12905 are separated by 5 nucleotides BBR_RS12905 and BBR_RS12910 are separated by 17 nucleotides
BBR_RS12900: BBR_RS12900 - DeoR/GlpR transcriptional regulator, at 646,389 to 647,192
_RS12900
BBR_RS12905: BBR_RS12905 - galactose-1-phosphate uridylyltransferase, at 647,198 to 648,448
_RS12905
BBR_RS12910: BBR_RS12910 - galactokinase, at 648,466 to 649,716
_RS12910
Position (kb) 647
648
649 Strain fitness (log2 ratio) -2
-1
0
1 at 646.219 kb on - strand at 646.234 kb on + strand at 646.308 kb on - strand at 646.308 kb on - strand at 646.592 kb on - strand, within BBR_RS12900 at 646.962 kb on + strand, within BBR_RS12900 at 647.041 kb on + strand, within BBR_RS12900 at 647.049 kb on + strand, within BBR_RS12900 at 647.235 kb on + strand at 647.277 kb on + strand at 647.285 kb on - strand at 647.417 kb on + strand, within BBR_RS12905 at 647.765 kb on - strand, within BBR_RS12905 at 647.955 kb on - strand, within BBR_RS12905 at 648.176 kb on - strand, within BBR_RS12905 at 648.229 kb on - strand, within BBR_RS12905 at 648.483 kb on - strand at 648.483 kb on - strand at 648.489 kb on + strand at 648.497 kb on + strand at 648.505 kb on - strand at 648.505 kb on - strand at 648.505 kb on - strand at 648.505 kb on - strand at 648.505 kb on - strand at 648.540 kb on + strand at 648.553 kb on + strand at 648.555 kb on + strand at 648.561 kb on - strand at 648.563 kb on - strand at 648.572 kb on - strand at 648.572 kb on - strand at 648.572 kb on - strand at 648.572 kb on - strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.574 kb on + strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.582 kb on - strand at 648.584 kb on + strand at 648.584 kb on + strand at 648.592 kb on - strand, within BBR_RS12910 at 648.593 kb on + strand, within BBR_RS12910 at 648.618 kb on - strand, within BBR_RS12910 at 648.618 kb on - strand, within BBR_RS12910 at 648.649 kb on - strand, within BBR_RS12910 at 648.665 kb on + strand, within BBR_RS12910 at 648.665 kb on + strand, within BBR_RS12910 at 648.665 kb on + strand, within BBR_RS12910 at 648.673 kb on - strand, within BBR_RS12910 at 648.698 kb on - strand, within BBR_RS12910 at 648.712 kb on + strand, within BBR_RS12910 at 648.746 kb on + strand, within BBR_RS12910 at 648.746 kb on + strand, within BBR_RS12910 at 648.755 kb on - strand, within BBR_RS12910 at 648.783 kb on + strand, within BBR_RS12910 at 648.795 kb on + strand, within BBR_RS12910 at 648.816 kb on - strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.828 kb on + strand, within BBR_RS12910 at 648.829 kb on + strand, within BBR_RS12910 at 648.836 kb on - strand, within BBR_RS12910 at 648.836 kb on - strand, within BBR_RS12910 at 648.837 kb on - strand, within BBR_RS12910 at 648.837 kb on - strand, within BBR_RS12910 at 648.850 kb on + strand, within BBR_RS12910 at 648.850 kb on + strand, within BBR_RS12910 at 648.856 kb on - strand, within BBR_RS12910 at 648.865 kb on + strand, within BBR_RS12910 at 648.872 kb on + strand, within BBR_RS12910 at 648.872 kb on + strand, within BBR_RS12910 at 648.872 kb on + strand, within BBR_RS12910 at 648.877 kb on + strand, within BBR_RS12910 at 648.880 kb on - strand, within BBR_RS12910 at 648.880 kb on - strand, within BBR_RS12910 at 648.895 kb on + strand, within BBR_RS12910 at 648.895 kb on + strand, within BBR_RS12910 at 648.895 kb on + strand, within BBR_RS12910 at 648.903 kb on - strand, within BBR_RS12910 at 648.903 kb on - strand, within BBR_RS12910 at 648.914 kb on + strand, within BBR_RS12910 at 648.931 kb on + strand, within BBR_RS12910 at 648.939 kb on - strand, within BBR_RS12910 at 648.939 kb on - strand, within BBR_RS12910 at 648.946 kb on - strand, within BBR_RS12910 at 648.946 kb on - strand, within BBR_RS12910 at 648.951 kb on - strand, within BBR_RS12910 at 648.968 kb on + strand, within BBR_RS12910 at 648.973 kb on + strand, within BBR_RS12910 at 648.976 kb on - strand, within BBR_RS12910 at 648.981 kb on - strand, within BBR_RS12910 at 648.988 kb on + strand, within BBR_RS12910 at 648.988 kb on + strand, within BBR_RS12910 at 648.990 kb on + strand, within BBR_RS12910 at 649.019 kb on - strand, within BBR_RS12910 at 649.019 kb on - strand, within BBR_RS12910 at 649.022 kb on + strand, within BBR_RS12910 at 649.022 kb on + strand, within BBR_RS12910 at 649.031 kb on + strand, within BBR_RS12910 at 649.031 kb on + strand, within BBR_RS12910 at 649.031 kb on + strand, within BBR_RS12910 at 649.039 kb on - strand, within BBR_RS12910 at 649.039 kb on - strand, within BBR_RS12910 at 649.053 kb on + strand, within BBR_RS12910 at 649.075 kb on - strand, within BBR_RS12910 at 649.121 kb on - strand, within BBR_RS12910 at 649.144 kb on - strand, within BBR_RS12910 at 649.144 kb on - strand, within BBR_RS12910 at 649.146 kb on + strand, within BBR_RS12910 at 649.146 kb on + strand, within BBR_RS12910 at 649.154 kb on - strand, within BBR_RS12910 at 649.154 kb on - strand, within BBR_RS12910 at 649.169 kb on - strand, within BBR_RS12910 at 649.203 kb on + strand, within BBR_RS12910 at 649.203 kb on + strand, within BBR_RS12910 at 649.223 kb on - strand, within BBR_RS12910 at 649.255 kb on + strand, within BBR_RS12910 at 649.255 kb on + strand, within BBR_RS12910 at 649.287 kb on + strand, within BBR_RS12910 at 649.295 kb on - strand, within BBR_RS12910 at 649.305 kb on + strand, within BBR_RS12910 at 649.305 kb on + strand, within BBR_RS12910 at 649.313 kb on - strand, within BBR_RS12910 at 649.313 kb on - strand, within BBR_RS12910 at 649.313 kb on - strand, within BBR_RS12910 at 649.408 kb on - strand, within BBR_RS12910 at 649.420 kb on - strand, within BBR_RS12910 at 649.420 kb on - strand, within BBR_RS12910 at 649.428 kb on + strand, within BBR_RS12910 at 649.428 kb on + strand, within BBR_RS12910
Per-strain Table
Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v remove 646,219 - -1.2 646,234 + -0.0 646,308 - -0.0 646,308 - +0.6 646,592 - BBR_RS12900 0.25 -0.2 646,962 + BBR_RS12900 0.71 -1.2 647,041 + BBR_RS12900 0.81 -0.4 647,049 + BBR_RS12900 0.82 -1.2 647,235 + -0.2 647,277 + -0.9 647,285 - -0.6 647,417 + BBR_RS12905 0.18 -0.9 647,765 - BBR_RS12905 0.45 -0.2 647,955 - BBR_RS12905 0.61 +0.5 648,176 - BBR_RS12905 0.78 -0.7 648,229 - BBR_RS12905 0.82 -2.1 648,483 - -0.1 648,483 - +0.4 648,489 + +0.1 648,497 + -0.1 648,505 - -0.3 648,505 - -0.1 648,505 - -0.3 648,505 - +0.0 648,505 - -0.3 648,540 + -0.2 648,553 + -0.7 648,555 + -0.2 648,561 - -0.3 648,563 - +0.9 648,572 - +0.3 648,572 - -0.3 648,572 - -0.2 648,572 - -0.4 648,574 + -0.3 648,574 + -0.0 648,574 + -0.2 648,574 + +0.3 648,574 + -0.5 648,574 + +0.3 648,574 + +0.2 648,574 + -0.1 648,574 + -0.4 648,574 + +0.3 648,574 + -0.1 648,574 + -0.5 648,574 + -0.9 648,574 + +0.7 648,574 + -0.1 648,574 + -0.8 648,574 + -0.5 648,582 - -0.2 648,582 - -0.4 648,582 - -0.1 648,582 - -0.3 648,582 - -0.7 648,582 - -1.1 648,582 - +1.3 648,582 - -0.4 648,582 - +0.1 648,584 + -0.2 648,584 + -0.5 648,592 - BBR_RS12910 0.10 +0.0 648,593 + BBR_RS12910 0.10 +0.0 648,618 - BBR_RS12910 0.12 +0.2 648,618 - BBR_RS12910 0.12 +0.4 648,649 - BBR_RS12910 0.15 -0.3 648,665 + BBR_RS12910 0.16 +0.2 648,665 + BBR_RS12910 0.16 -0.4 648,665 + BBR_RS12910 0.16 -0.2 648,673 - BBR_RS12910 0.17 +0.4 648,698 - BBR_RS12910 0.19 -0.1 648,712 + BBR_RS12910 0.20 -1.2 648,746 + BBR_RS12910 0.22 -0.1 648,746 + BBR_RS12910 0.22 +0.2 648,755 - BBR_RS12910 0.23 -0.9 648,783 + BBR_RS12910 0.25 -0.1 648,795 + BBR_RS12910 0.26 +0.4 648,816 - BBR_RS12910 0.28 -1.1 648,828 + BBR_RS12910 0.29 +0.3 648,828 + BBR_RS12910 0.29 -0.4 648,828 + BBR_RS12910 0.29 -0.0 648,828 + BBR_RS12910 0.29 +0.2 648,828 + BBR_RS12910 0.29 +0.8 648,828 + BBR_RS12910 0.29 -0.0 648,829 + BBR_RS12910 0.29 +0.2 648,836 - BBR_RS12910 0.30 -0.2 648,836 - BBR_RS12910 0.30 +0.1 648,837 - BBR_RS12910 0.30 +0.7 648,837 - BBR_RS12910 0.30 -0.5 648,850 + BBR_RS12910 0.31 +0.3 648,850 + BBR_RS12910 0.31 -0.1 648,856 - BBR_RS12910 0.31 +0.1 648,865 + BBR_RS12910 0.32 +0.2 648,872 + BBR_RS12910 0.32 +0.3 648,872 + BBR_RS12910 0.32 +0.1 648,872 + BBR_RS12910 0.32 +0.5 648,877 + BBR_RS12910 0.33 +0.6 648,880 - BBR_RS12910 0.33 +0.1 648,880 - BBR_RS12910 0.33 +0.2 648,895 + BBR_RS12910 0.34 -0.1 648,895 + BBR_RS12910 0.34 -0.5 648,895 + BBR_RS12910 0.34 -0.0 648,903 - BBR_RS12910 0.35 +0.9 648,903 - BBR_RS12910 0.35 -0.4 648,914 + BBR_RS12910 0.36 +0.3 648,931 + BBR_RS12910 0.37 +0.0 648,939 - BBR_RS12910 0.38 -0.4 648,939 - BBR_RS12910 0.38 -0.8 648,946 - BBR_RS12910 0.38 -0.6 648,946 - BBR_RS12910 0.38 -0.6 648,951 - BBR_RS12910 0.39 -0.4 648,968 + BBR_RS12910 0.40 -1.5 648,973 + BBR_RS12910 0.41 -0.5 648,976 - BBR_RS12910 0.41 +0.2 648,981 - BBR_RS12910 0.41 -1.2 648,988 + BBR_RS12910 0.42 +0.0 648,988 + BBR_RS12910 0.42 +0.3 648,990 + BBR_RS12910 0.42 -0.5 649,019 - BBR_RS12910 0.44 -0.0 649,019 - BBR_RS12910 0.44 -0.2 649,022 + BBR_RS12910 0.44 +0.4 649,022 + BBR_RS12910 0.44 +0.1 649,031 + BBR_RS12910 0.45 +1.1 649,031 + BBR_RS12910 0.45 -0.2 649,031 + BBR_RS12910 0.45 -0.6 649,039 - BBR_RS12910 0.46 -0.5 649,039 - BBR_RS12910 0.46 +0.4 649,053 + BBR_RS12910 0.47 +0.1 649,075 - BBR_RS12910 0.49 +0.0 649,121 - BBR_RS12910 0.52 -0.8 649,144 - BBR_RS12910 0.54 -0.0 649,144 - BBR_RS12910 0.54 -0.1 649,146 + BBR_RS12910 0.54 +0.1 649,146 + BBR_RS12910 0.54 +0.1 649,154 - BBR_RS12910 0.55 -0.2 649,154 - BBR_RS12910 0.55 +0.3 649,169 - BBR_RS12910 0.56 +0.1 649,203 + BBR_RS12910 0.59 +0.8 649,203 + BBR_RS12910 0.59 -0.6 649,223 - BBR_RS12910 0.61 -0.4 649,255 + BBR_RS12910 0.63 -0.3 649,255 + BBR_RS12910 0.63 +0.1 649,287 + BBR_RS12910 0.66 +0.4 649,295 - BBR_RS12910 0.66 -0.9 649,305 + BBR_RS12910 0.67 +0.8 649,305 + BBR_RS12910 0.67 -0.7 649,313 - BBR_RS12910 0.68 -0.1 649,313 - BBR_RS12910 0.68 +0.4 649,313 - BBR_RS12910 0.68 -0.0 649,408 - BBR_RS12910 0.75 -0.7 649,420 - BBR_RS12910 0.76 -0.7 649,420 - BBR_RS12910 0.76 -0.4 649,428 + BBR_RS12910 0.77 -0.1 649,428 + BBR_RS12910 0.77 -0.0
Or see this region's nucleotide sequence