Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12820

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12815 and BBR_RS12820 are separated by 301 nucleotidesBBR_RS12820 and BBR_RS12825 are separated by 197 nucleotides BBR_RS12815: BBR_RS12815 - hypothetical protein, at 624,485 to 624,919 _RS12815 BBR_RS12820: BBR_RS12820 - hypothetical protein, at 625,221 to 626,657 _RS12820 BBR_RS12825: BBR_RS12825 - hypothetical protein, at 626,855 to 628,222 _RS12825 Position (kb) 625 626 627Strain fitness (log2 ratio) -2 -1 0 1 2at 624.227 kb on + strandat 624.233 kb on - strandat 624.233 kb on - strandat 624.243 kb on - strandat 624.257 kb on - strandat 624.283 kb on - strandat 624.285 kb on + strandat 624.293 kb on - strandat 624.361 kb on + strandat 624.369 kb on - strandat 624.369 kb on - strandat 624.373 kb on + strandat 624.455 kb on + strandat 624.455 kb on + strandat 624.455 kb on - strandat 624.492 kb on + strandat 624.493 kb on - strandat 624.519 kb on - strandat 624.519 kb on - strandat 624.520 kb on - strandat 624.528 kb on - strandat 624.557 kb on + strand, within BBR_RS12815at 624.571 kb on + strand, within BBR_RS12815at 624.571 kb on + strand, within BBR_RS12815at 624.599 kb on + strand, within BBR_RS12815at 624.632 kb on - strand, within BBR_RS12815at 624.670 kb on + strand, within BBR_RS12815at 624.672 kb on - strand, within BBR_RS12815at 624.693 kb on + strand, within BBR_RS12815at 624.696 kb on - strand, within BBR_RS12815at 624.700 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.717 kb on + strand, within BBR_RS12815at 624.725 kb on - strand, within BBR_RS12815at 624.735 kb on - strand, within BBR_RS12815at 624.761 kb on + strand, within BBR_RS12815at 624.788 kb on - strand, within BBR_RS12815at 624.852 kb on - strand, within BBR_RS12815at 624.859 kb on - strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.881 kb on - strandat 624.881 kb on - strandat 624.899 kb on - strandat 624.928 kb on + strandat 624.936 kb on - strandat 624.936 kb on - strandat 625.094 kb on + strandat 625.095 kb on - strandat 625.095 kb on - strandat 625.100 kb on - strandat 625.117 kb on - strandat 625.137 kb on + strandat 625.148 kb on + strandat 625.168 kb on + strandat 625.168 kb on + strandat 625.221 kb on - strandat 625.257 kb on + strandat 625.347 kb on + strandat 625.353 kb on - strandat 625.400 kb on + strand, within BBR_RS12820at 625.401 kb on + strand, within BBR_RS12820at 625.447 kb on + strand, within BBR_RS12820at 625.475 kb on + strand, within BBR_RS12820at 625.505 kb on + strand, within BBR_RS12820at 625.560 kb on - strand, within BBR_RS12820at 625.662 kb on - strand, within BBR_RS12820at 625.705 kb on + strand, within BBR_RS12820at 625.708 kb on - strand, within BBR_RS12820at 625.727 kb on - strand, within BBR_RS12820at 625.727 kb on - strand, within BBR_RS12820at 625.734 kb on + strand, within BBR_RS12820at 625.734 kb on + strand, within BBR_RS12820at 625.760 kb on + strand, within BBR_RS12820at 625.773 kb on + strand, within BBR_RS12820at 625.798 kb on - strand, within BBR_RS12820at 625.806 kb on - strand, within BBR_RS12820at 625.812 kb on - strand, within BBR_RS12820at 625.831 kb on + strand, within BBR_RS12820at 625.831 kb on + strand, within BBR_RS12820at 625.876 kb on + strand, within BBR_RS12820at 625.883 kb on + strand, within BBR_RS12820at 626.018 kb on + strand, within BBR_RS12820at 626.020 kb on + strand, within BBR_RS12820at 626.020 kb on + strand, within BBR_RS12820at 626.020 kb on + strand, within BBR_RS12820at 626.044 kb on + strand, within BBR_RS12820at 626.047 kb on + strand, within BBR_RS12820at 626.047 kb on + strand, within BBR_RS12820at 626.047 kb on + strand, within BBR_RS12820at 626.047 kb on + strand, within BBR_RS12820at 626.055 kb on - strand, within BBR_RS12820at 626.147 kb on + strand, within BBR_RS12820at 626.195 kb on + strand, within BBR_RS12820at 626.197 kb on + strand, within BBR_RS12820at 626.203 kb on - strand, within BBR_RS12820at 626.219 kb on + strand, within BBR_RS12820at 626.240 kb on + strand, within BBR_RS12820at 626.258 kb on + strand, within BBR_RS12820at 626.294 kb on + strand, within BBR_RS12820at 626.344 kb on + strand, within BBR_RS12820at 626.344 kb on + strand, within BBR_RS12820at 626.411 kb on + strand, within BBR_RS12820at 626.430 kb on + strand, within BBR_RS12820at 626.448 kb on + strand, within BBR_RS12820at 626.496 kb on + strand, within BBR_RS12820at 626.496 kb on + strand, within BBR_RS12820at 626.503 kb on + strand, within BBR_RS12820at 626.509 kb on - strand, within BBR_RS12820at 626.549 kb on + strandat 626.619 kb on - strandat 626.622 kb on + strandat 626.667 kb on - strandat 626.703 kb on - strandat 626.711 kb on - strandat 626.717 kb on + strandat 626.717 kb on + strandat 626.718 kb on + strandat 626.806 kb on + strandat 626.806 kb on + strandat 626.821 kb on + strandat 626.824 kb on - strandat 626.824 kb on - strandat 626.829 kb on - strandat 626.829 kb on - strandat 626.886 kb on + strandat 626.964 kb on + strandat 626.964 kb on + strandat 626.967 kb on - strandat 627.011 kb on - strand, within BBR_RS12825at 627.029 kb on - strand, within BBR_RS12825at 627.037 kb on + strand, within BBR_RS12825at 627.077 kb on + strand, within BBR_RS12825at 627.077 kb on + strand, within BBR_RS12825at 627.085 kb on - strand, within BBR_RS12825at 627.095 kb on - strand, within BBR_RS12825at 627.163 kb on - strand, within BBR_RS12825at 627.170 kb on - strand, within BBR_RS12825at 627.316 kb on + strand, within BBR_RS12825at 627.316 kb on + strand, within BBR_RS12825at 627.332 kb on - strand, within BBR_RS12825at 627.356 kb on - strand, within BBR_RS12825at 627.360 kb on + strand, within BBR_RS12825at 627.435 kb on - strand, within BBR_RS12825at 627.460 kb on + strand, within BBR_RS12825at 627.468 kb on - strand, within BBR_RS12825at 627.514 kb on + strand, within BBR_RS12825at 627.554 kb on + strand, within BBR_RS12825at 627.568 kb on + strand, within BBR_RS12825at 627.568 kb on + strand, within BBR_RS12825at 627.575 kb on + strand, within BBR_RS12825at 627.594 kb on - strand, within BBR_RS12825at 627.594 kb on - strand, within BBR_RS12825at 627.596 kb on + strand, within BBR_RS12825at 627.604 kb on + strand, within BBR_RS12825at 627.612 kb on - strand, within BBR_RS12825at 627.612 kb on - strand, within BBR_RS12825at 627.622 kb on + strand, within BBR_RS12825at 627.635 kb on + strand, within BBR_RS12825at 627.643 kb on - strand, within BBR_RS12825

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
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624,227 + +0.5
624,233 - +0.8
624,233 - -0.0
624,243 - +1.2
624,257 - +0.6
624,283 - -0.0
624,285 + -0.3
624,293 - +0.2
624,361 + -0.0
624,369 - +0.3
624,369 - +0.2
624,373 + +0.7
624,455 + -0.1
624,455 + +0.4
624,455 - +0.7
624,492 + +0.2
624,493 - +0.5
624,519 - -0.4
624,519 - +0.2
624,520 - -0.4
624,528 - -1.0
624,557 + BBR_RS12815 0.17 -0.3
624,571 + BBR_RS12815 0.20 +0.1
624,571 + BBR_RS12815 0.20 -0.2
624,599 + BBR_RS12815 0.26 +0.7
624,632 - BBR_RS12815 0.34 +0.4
624,670 + BBR_RS12815 0.43 +0.3
624,672 - BBR_RS12815 0.43 +0.2
624,693 + BBR_RS12815 0.48 -0.2
624,696 - BBR_RS12815 0.49 +0.5
624,700 - BBR_RS12815 0.49 -0.1
624,701 - BBR_RS12815 0.50 +0.0
624,701 - BBR_RS12815 0.50 +0.1
624,701 - BBR_RS12815 0.50 +0.3
624,717 + BBR_RS12815 0.53 +0.4
624,725 - BBR_RS12815 0.55 +0.2
624,735 - BBR_RS12815 0.57 -1.1
624,761 + BBR_RS12815 0.63 +1.9
624,788 - BBR_RS12815 0.70 +0.8
624,852 - BBR_RS12815 0.84 +0.8
624,859 - BBR_RS12815 0.86 -0.4
624,873 + BBR_RS12815 0.89 +0.3
624,873 + BBR_RS12815 0.89 +0.5
624,873 + BBR_RS12815 0.89 +1.1
624,881 - +0.5
624,881 - -0.3
624,899 - -0.9
624,928 + +0.1
624,936 - +0.2
624,936 - +0.0
625,094 + -0.7
625,095 - +0.0
625,095 - -0.1
625,100 - +0.3
625,117 - -0.5
625,137 + +0.0
625,148 + +0.4
625,168 + +0.3
625,168 + -0.6
625,221 - +0.0
625,257 + -0.2
625,347 + -0.9
625,353 - -1.5
625,400 + BBR_RS12820 0.12 -1.3
625,401 + BBR_RS12820 0.13 -1.4
625,447 + BBR_RS12820 0.16 -1.9
625,475 + BBR_RS12820 0.18 -0.3
625,505 + BBR_RS12820 0.20 -0.2
625,560 - BBR_RS12820 0.24 -0.3
625,662 - BBR_RS12820 0.31 -0.3
625,705 + BBR_RS12820 0.34 -1.0
625,708 - BBR_RS12820 0.34 +0.5
625,727 - BBR_RS12820 0.35 -2.2
625,727 - BBR_RS12820 0.35 -0.1
625,734 + BBR_RS12820 0.36 -1.1
625,734 + BBR_RS12820 0.36 -1.0
625,760 + BBR_RS12820 0.38 -0.7
625,773 + BBR_RS12820 0.38 -0.8
625,798 - BBR_RS12820 0.40 -2.0
625,806 - BBR_RS12820 0.41 -0.4
625,812 - BBR_RS12820 0.41 -1.2
625,831 + BBR_RS12820 0.42 -0.4
625,831 + BBR_RS12820 0.42 -0.0
625,876 + BBR_RS12820 0.46 -2.2
625,883 + BBR_RS12820 0.46 -0.7
626,018 + BBR_RS12820 0.55 -0.6
626,020 + BBR_RS12820 0.56 -0.4
626,020 + BBR_RS12820 0.56 -0.9
626,020 + BBR_RS12820 0.56 +0.3
626,044 + BBR_RS12820 0.57 -0.6
626,047 + BBR_RS12820 0.57 -1.1
626,047 + BBR_RS12820 0.57 -0.9
626,047 + BBR_RS12820 0.57 -1.2
626,047 + BBR_RS12820 0.57 -0.6
626,055 - BBR_RS12820 0.58 -1.2
626,147 + BBR_RS12820 0.64 -1.6
626,195 + BBR_RS12820 0.68 -1.2
626,197 + BBR_RS12820 0.68 -0.1
626,203 - BBR_RS12820 0.68 -1.3
626,219 + BBR_RS12820 0.69 -0.6
626,240 + BBR_RS12820 0.71 -1.9
626,258 + BBR_RS12820 0.72 -1.1
626,294 + BBR_RS12820 0.75 -0.8
626,344 + BBR_RS12820 0.78 -1.2
626,344 + BBR_RS12820 0.78 -0.1
626,411 + BBR_RS12820 0.83 -1.8
626,430 + BBR_RS12820 0.84 -2.0
626,448 + BBR_RS12820 0.85 -0.4
626,496 + BBR_RS12820 0.89 -0.6
626,496 + BBR_RS12820 0.89 -0.1
626,503 + BBR_RS12820 0.89 -0.6
626,509 - BBR_RS12820 0.90 -0.6
626,549 + +0.1
626,619 - +1.9
626,622 + +0.1
626,667 - +0.5
626,703 - +0.7
626,711 - -0.1
626,717 + +0.3
626,717 + -0.2
626,718 + +0.5
626,806 + +0.6
626,806 + +0.5
626,821 + -0.2
626,824 - +0.3
626,824 - +0.3
626,829 - +0.1
626,829 - -0.2
626,886 + +0.5
626,964 + +0.5
626,964 + +0.4
626,967 - -0.7
627,011 - BBR_RS12825 0.11 +0.2
627,029 - BBR_RS12825 0.13 -0.1
627,037 + BBR_RS12825 0.13 +0.8
627,077 + BBR_RS12825 0.16 +0.0
627,077 + BBR_RS12825 0.16 +0.3
627,085 - BBR_RS12825 0.17 -0.0
627,095 - BBR_RS12825 0.18 -0.4
627,163 - BBR_RS12825 0.23 +0.6
627,170 - BBR_RS12825 0.23 +0.0
627,316 + BBR_RS12825 0.34 +0.4
627,316 + BBR_RS12825 0.34 +0.7
627,332 - BBR_RS12825 0.35 +0.3
627,356 - BBR_RS12825 0.37 -0.7
627,360 + BBR_RS12825 0.37 +1.1
627,435 - BBR_RS12825 0.42 +0.2
627,460 + BBR_RS12825 0.44 +0.3
627,468 - BBR_RS12825 0.45 -0.3
627,514 + BBR_RS12825 0.48 +0.3
627,554 + BBR_RS12825 0.51 -0.6
627,568 + BBR_RS12825 0.52 +0.5
627,568 + BBR_RS12825 0.52 +0.7
627,575 + BBR_RS12825 0.53 +0.6
627,594 - BBR_RS12825 0.54 -0.4
627,594 - BBR_RS12825 0.54 -1.1
627,596 + BBR_RS12825 0.54 -0.3
627,604 + BBR_RS12825 0.55 +0.2
627,612 - BBR_RS12825 0.55 +0.1
627,612 - BBR_RS12825 0.55 -1.6
627,622 + BBR_RS12825 0.56 -0.6
627,635 + BBR_RS12825 0.57 +0.8
627,643 - BBR_RS12825 0.58 -0.1

Or see this region's nucleotide sequence