Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12555

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12550 and BBR_RS12555 are separated by 275 nucleotidesBBR_RS12555 and BBR_RS12560 are separated by 391 nucleotides BBR_RS12550: BBR_RS12550 - sugar transferase, at 573,158 to 574,876 _RS12550 BBR_RS12555: BBR_RS12555 - protein-tyrosine-phosphatase, at 575,152 to 575,757 _RS12555 BBR_RS12560: BBR_RS12560 - transposase, at 576,149 to 576,799 _RS12560 Position (kb) 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 574.155 kb on - strand, within BBR_RS12550at 574.240 kb on + strand, within BBR_RS12550at 574.246 kb on - strand, within BBR_RS12550at 574.287 kb on - strand, within BBR_RS12550at 574.326 kb on + strand, within BBR_RS12550at 574.345 kb on + strand, within BBR_RS12550at 574.353 kb on - strand, within BBR_RS12550at 574.390 kb on + strand, within BBR_RS12550at 574.398 kb on - strand, within BBR_RS12550at 574.398 kb on - strand, within BBR_RS12550at 574.432 kb on - strand, within BBR_RS12550at 574.442 kb on - strand, within BBR_RS12550at 574.442 kb on - strand, within BBR_RS12550at 574.461 kb on - strand, within BBR_RS12550at 574.478 kb on + strand, within BBR_RS12550at 574.481 kb on + strand, within BBR_RS12550at 574.496 kb on + strand, within BBR_RS12550at 574.496 kb on - strand, within BBR_RS12550at 574.501 kb on + strand, within BBR_RS12550at 574.501 kb on + strand, within BBR_RS12550at 574.501 kb on + strand, within BBR_RS12550at 574.509 kb on - strand, within BBR_RS12550at 574.516 kb on + strand, within BBR_RS12550at 574.528 kb on - strand, within BBR_RS12550at 574.529 kb on - strand, within BBR_RS12550at 574.534 kb on - strand, within BBR_RS12550at 574.536 kb on - strand, within BBR_RS12550at 574.536 kb on - strand, within BBR_RS12550at 574.545 kb on + strand, within BBR_RS12550at 574.577 kb on - strand, within BBR_RS12550at 574.603 kb on - strand, within BBR_RS12550at 574.604 kb on + strand, within BBR_RS12550at 574.612 kb on - strand, within BBR_RS12550at 574.642 kb on + strand, within BBR_RS12550at 574.642 kb on + strand, within BBR_RS12550at 574.664 kb on + strand, within BBR_RS12550at 574.706 kb on - strandat 574.745 kb on - strandat 574.785 kb on - strandat 574.785 kb on - strandat 574.787 kb on + strandat 574.804 kb on + strandat 574.806 kb on + strandat 574.806 kb on + strandat 574.806 kb on + strandat 574.807 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.814 kb on - strandat 574.818 kb on + strandat 574.824 kb on - strandat 574.885 kb on + strandat 574.903 kb on - strandat 574.903 kb on - strandat 574.903 kb on - strandat 574.903 kb on - strandat 574.943 kb on + strandat 574.951 kb on - strandat 575.139 kb on - strandat 575.141 kb on + strandat 575.194 kb on + strandat 575.265 kb on + strand, within BBR_RS12555at 575.265 kb on + strand, within BBR_RS12555at 575.271 kb on + strand, within BBR_RS12555at 575.287 kb on + strand, within BBR_RS12555at 575.287 kb on + strand, within BBR_RS12555at 575.292 kb on + strand, within BBR_RS12555at 575.337 kb on + strand, within BBR_RS12555at 575.349 kb on + strand, within BBR_RS12555at 575.356 kb on + strand, within BBR_RS12555at 575.430 kb on + strand, within BBR_RS12555at 575.430 kb on + strand, within BBR_RS12555at 575.503 kb on + strand, within BBR_RS12555at 575.508 kb on + strand, within BBR_RS12555at 575.523 kb on - strand, within BBR_RS12555at 575.553 kb on - strand, within BBR_RS12555at 575.657 kb on - strand, within BBR_RS12555at 575.672 kb on - strand, within BBR_RS12555at 575.686 kb on + strand, within BBR_RS12555at 575.750 kb on - strandat 575.760 kb on - strandat 575.776 kb on + strandat 575.805 kb on + strandat 575.805 kb on + strandat 575.949 kb on - strandat 576.027 kb on + strandat 576.049 kb on + strandat 576.064 kb on + strandat 576.064 kb on - strandat 576.072 kb on - strandat 576.083 kb on + strandat 576.091 kb on - strandat 576.100 kb on + strandat 576.121 kb on + strandat 576.182 kb on + strandat 576.192 kb on + strandat 576.208 kb on - strandat 576.210 kb on - strandat 576.210 kb on - strandat 576.210 kb on - strandat 576.240 kb on - strand, within BBR_RS12560at 576.324 kb on - strand, within BBR_RS12560at 576.415 kb on - strand, within BBR_RS12560at 576.415 kb on - strand, within BBR_RS12560at 576.415 kb on - strand, within BBR_RS12560at 576.425 kb on - strand, within BBR_RS12560at 576.455 kb on + strand, within BBR_RS12560at 576.466 kb on + strand, within BBR_RS12560at 576.555 kb on + strand, within BBR_RS12560at 576.555 kb on + strand, within BBR_RS12560at 576.577 kb on + strand, within BBR_RS12560at 576.596 kb on - strand, within BBR_RS12560at 576.649 kb on - strand, within BBR_RS12560at 576.676 kb on + strand, within BBR_RS12560at 576.728 kb on - strand, within BBR_RS12560at 576.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
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574,155 - BBR_RS12550 0.58 -0.6
574,240 + BBR_RS12550 0.63 -0.3
574,246 - BBR_RS12550 0.63 -0.2
574,287 - BBR_RS12550 0.66 -0.3
574,326 + BBR_RS12550 0.68 -0.1
574,345 + BBR_RS12550 0.69 +0.1
574,353 - BBR_RS12550 0.70 -1.1
574,390 + BBR_RS12550 0.72 -0.3
574,398 - BBR_RS12550 0.72 -0.5
574,398 - BBR_RS12550 0.72 -0.6
574,432 - BBR_RS12550 0.74 -0.5
574,442 - BBR_RS12550 0.75 -0.3
574,442 - BBR_RS12550 0.75 -0.2
574,461 - BBR_RS12550 0.76 +0.4
574,478 + BBR_RS12550 0.77 +0.0
574,481 + BBR_RS12550 0.77 -1.2
574,496 + BBR_RS12550 0.78 -0.1
574,496 - BBR_RS12550 0.78 -0.6
574,501 + BBR_RS12550 0.78 +0.5
574,501 + BBR_RS12550 0.78 +0.4
574,501 + BBR_RS12550 0.78 +0.4
574,509 - BBR_RS12550 0.79 +0.3
574,516 + BBR_RS12550 0.79 -0.2
574,528 - BBR_RS12550 0.80 -1.1
574,529 - BBR_RS12550 0.80 +0.1
574,534 - BBR_RS12550 0.80 -1.2
574,536 - BBR_RS12550 0.80 +0.0
574,536 - BBR_RS12550 0.80 -0.9
574,545 + BBR_RS12550 0.81 -0.3
574,577 - BBR_RS12550 0.83 -0.8
574,603 - BBR_RS12550 0.84 -0.4
574,604 + BBR_RS12550 0.84 -0.3
574,612 - BBR_RS12550 0.85 +0.2
574,642 + BBR_RS12550 0.86 -0.6
574,642 + BBR_RS12550 0.86 -0.0
574,664 + BBR_RS12550 0.88 -1.5
574,706 - -0.5
574,745 - -0.6
574,785 - +0.1
574,785 - +0.5
574,787 + -0.0
574,804 + -0.2
574,806 + -1.6
574,806 + -0.4
574,806 + -0.2
574,807 - -0.9
574,814 - -0.3
574,814 - -0.8
574,814 - +0.6
574,814 - -0.1
574,814 - +0.4
574,814 - +0.3
574,818 + +0.2
574,824 - +0.7
574,885 + +0.1
574,903 - +0.0
574,903 - -0.3
574,903 - +0.9
574,903 - -0.0
574,943 + +0.0
574,951 - +0.8
575,139 - +0.8
575,141 + +0.1
575,194 + +0.1
575,265 + BBR_RS12555 0.19 -1.8
575,265 + BBR_RS12555 0.19 -0.9
575,271 + BBR_RS12555 0.20 -1.0
575,287 + BBR_RS12555 0.22 +0.3
575,287 + BBR_RS12555 0.22 -0.3
575,292 + BBR_RS12555 0.23 +0.1
575,337 + BBR_RS12555 0.31 +0.2
575,349 + BBR_RS12555 0.33 -1.5
575,356 + BBR_RS12555 0.34 -0.2
575,430 + BBR_RS12555 0.46 -0.2
575,430 + BBR_RS12555 0.46 -0.9
575,503 + BBR_RS12555 0.58 -0.9
575,508 + BBR_RS12555 0.59 -0.4
575,523 - BBR_RS12555 0.61 +0.3
575,553 - BBR_RS12555 0.66 -0.7
575,657 - BBR_RS12555 0.83 -0.8
575,672 - BBR_RS12555 0.86 +0.4
575,686 + BBR_RS12555 0.88 -0.9
575,750 - -0.5
575,760 - -0.2
575,776 + +0.4
575,805 + +0.1
575,805 + +1.0
575,949 - -0.8
576,027 + +0.9
576,049 + -0.6
576,064 + +0.4
576,064 - +0.0
576,072 - +2.1
576,083 + -1.5
576,091 - -0.9
576,100 + -0.2
576,121 + -0.3
576,182 + +0.1
576,192 + +0.2
576,208 - +0.5
576,210 - -0.1
576,210 - +0.5
576,210 - +0.1
576,240 - BBR_RS12560 0.14 +0.2
576,324 - BBR_RS12560 0.27 -0.4
576,415 - BBR_RS12560 0.41 +0.4
576,415 - BBR_RS12560 0.41 -1.1
576,415 - BBR_RS12560 0.41 -0.1
576,425 - BBR_RS12560 0.42 -0.0
576,455 + BBR_RS12560 0.47 +0.3
576,466 + BBR_RS12560 0.49 -0.2
576,555 + BBR_RS12560 0.62 +0.3
576,555 + BBR_RS12560 0.62 +0.5
576,577 + BBR_RS12560 0.66 +0.5
576,596 - BBR_RS12560 0.69 -0.6
576,649 - BBR_RS12560 0.77 -0.9
576,676 + BBR_RS12560 0.81 -1.4
576,728 - BBR_RS12560 0.89 +0.2
576,754 - -0.1

Or see this region's nucleotide sequence