Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12540 and BBR_RS12545 are separated by 367 nucleotides BBR_RS12545 and BBR_RS12550 are separated by 93 nucleotides
BBR_RS12540: BBR_RS12540 - MFS transporter, at 569,338 to 570,936
_RS12540
BBR_RS12545: BBR_RS12545 - DUF4012 domain-containing protein, at 571,304 to 573,064
_RS12545
BBR_RS12550: BBR_RS12550 - sugar transferase, at 573,158 to 574,876
_RS12550
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 570.308 kb on + strand, within BBR_RS12540 at 570.319 kb on - strand, within BBR_RS12540 at 570.341 kb on - strand, within BBR_RS12540 at 570.350 kb on + strand, within BBR_RS12540 at 570.423 kb on + strand, within BBR_RS12540 at 570.423 kb on + strand, within BBR_RS12540 at 570.437 kb on + strand, within BBR_RS12540 at 570.437 kb on + strand, within BBR_RS12540 at 570.445 kb on - strand, within BBR_RS12540 at 570.445 kb on - strand, within BBR_RS12540 at 570.445 kb on - strand, within BBR_RS12540 at 570.446 kb on + strand, within BBR_RS12540 at 570.487 kb on - strand, within BBR_RS12540 at 570.502 kb on + strand, within BBR_RS12540 at 570.507 kb on - strand, within BBR_RS12540 at 570.512 kb on + strand, within BBR_RS12540 at 570.512 kb on + strand, within BBR_RS12540 at 570.512 kb on + strand, within BBR_RS12540 at 570.515 kb on - strand, within BBR_RS12540 at 570.517 kb on + strand, within BBR_RS12540 at 570.525 kb on - strand, within BBR_RS12540 at 570.525 kb on - strand, within BBR_RS12540 at 570.548 kb on + strand, within BBR_RS12540 at 570.571 kb on + strand, within BBR_RS12540 at 570.576 kb on + strand, within BBR_RS12540 at 570.576 kb on + strand, within BBR_RS12540 at 570.686 kb on + strand, within BBR_RS12540 at 570.695 kb on + strand, within BBR_RS12540 at 570.699 kb on - strand, within BBR_RS12540 at 570.720 kb on + strand, within BBR_RS12540 at 570.720 kb on + strand, within BBR_RS12540 at 570.837 kb on + strand at 570.853 kb on - strand at 570.880 kb on + strand at 570.881 kb on - strand at 570.888 kb on - strand at 570.888 kb on - strand at 570.888 kb on - strand at 570.919 kb on + strand at 570.940 kb on + strand at 570.940 kb on - strand at 570.940 kb on - strand at 570.946 kb on - strand at 571.007 kb on - strand at 571.060 kb on + strand at 571.060 kb on - strand at 571.088 kb on + strand at 571.088 kb on + strand at 571.088 kb on + strand at 571.096 kb on - strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.103 kb on + strand at 571.103 kb on - strand at 571.103 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.110 kb on - strand at 571.122 kb on + strand at 571.131 kb on + strand at 571.168 kb on - strand at 571.193 kb on - strand at 571.211 kb on - strand at 571.211 kb on - strand at 571.211 kb on - strand at 571.211 kb on - strand at 571.464 kb on + strand at 571.464 kb on - strand at 571.464 kb on - strand at 571.500 kb on + strand, within BBR_RS12545 at 571.534 kb on + strand, within BBR_RS12545 at 571.615 kb on + strand, within BBR_RS12545 at 571.783 kb on + strand, within BBR_RS12545 at 571.813 kb on + strand, within BBR_RS12545 at 571.923 kb on + strand, within BBR_RS12545 at 571.937 kb on + strand, within BBR_RS12545 at 571.979 kb on + strand, within BBR_RS12545 at 572.177 kb on - strand, within BBR_RS12545 at 572.304 kb on + strand, within BBR_RS12545 at 572.350 kb on + strand, within BBR_RS12545 at 572.497 kb on + strand, within BBR_RS12545 at 572.543 kb on + strand, within BBR_RS12545 at 572.543 kb on - strand, within BBR_RS12545 at 572.604 kb on + strand, within BBR_RS12545 at 572.919 kb on + strand at 572.954 kb on + strand at 572.962 kb on + strand at 572.969 kb on - strand at 573.012 kb on - strand at 573.015 kb on + strand at 573.036 kb on + strand at 573.084 kb on - strand at 573.084 kb on - strand at 573.086 kb on + strand at 573.098 kb on + strand at 573.106 kb on - strand at 573.108 kb on - strand at 573.131 kb on - strand at 573.147 kb on - strand at 573.158 kb on + strand at 573.166 kb on - strand at 573.166 kb on - strand at 573.166 kb on - strand at 573.166 kb on - strand at 573.243 kb on - strand at 573.265 kb on + strand at 573.273 kb on - strand at 573.273 kb on - strand at 573.304 kb on + strand at 573.309 kb on + strand at 573.336 kb on + strand, within BBR_RS12550 at 573.361 kb on - strand, within BBR_RS12550 at 573.361 kb on - strand, within BBR_RS12550 at 573.366 kb on - strand, within BBR_RS12550 at 573.371 kb on - strand, within BBR_RS12550 at 573.375 kb on + strand, within BBR_RS12550 at 573.418 kb on - strand, within BBR_RS12550 at 573.418 kb on - strand, within BBR_RS12550 at 573.500 kb on - strand, within BBR_RS12550 at 573.594 kb on + strand, within BBR_RS12550 at 573.622 kb on - strand, within BBR_RS12550 at 573.642 kb on + strand, within BBR_RS12550 at 573.642 kb on + strand, within BBR_RS12550 at 573.648 kb on + strand, within BBR_RS12550 at 573.648 kb on + strand, within BBR_RS12550 at 573.665 kb on - strand, within BBR_RS12550 at 573.723 kb on - strand, within BBR_RS12550 at 573.738 kb on + strand, within BBR_RS12550 at 573.764 kb on + strand, within BBR_RS12550 at 573.769 kb on + strand, within BBR_RS12550 at 573.828 kb on - strand, within BBR_RS12550 at 573.830 kb on + strand, within BBR_RS12550 at 573.833 kb on + strand, within BBR_RS12550 at 573.838 kb on - strand, within BBR_RS12550 at 573.843 kb on - strand, within BBR_RS12550 at 573.875 kb on + strand, within BBR_RS12550 at 573.875 kb on + strand, within BBR_RS12550 at 573.895 kb on + strand, within BBR_RS12550 at 573.935 kb on + strand, within BBR_RS12550 at 573.943 kb on - strand, within BBR_RS12550 at 573.961 kb on + strand, within BBR_RS12550 at 574.052 kb on + strand, within BBR_RS12550
Per-strain Table
Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v remove 570,308 + BBR_RS12540 0.61 +0.5 570,319 - BBR_RS12540 0.61 +0.2 570,341 - BBR_RS12540 0.63 -0.1 570,350 + BBR_RS12540 0.63 +0.4 570,423 + BBR_RS12540 0.68 +0.5 570,423 + BBR_RS12540 0.68 -0.1 570,437 + BBR_RS12540 0.69 +1.3 570,437 + BBR_RS12540 0.69 +0.1 570,445 - BBR_RS12540 0.69 -0.3 570,445 - BBR_RS12540 0.69 -0.0 570,445 - BBR_RS12540 0.69 -0.1 570,446 + BBR_RS12540 0.69 +0.0 570,487 - BBR_RS12540 0.72 -1.6 570,502 + BBR_RS12540 0.73 -0.1 570,507 - BBR_RS12540 0.73 +0.1 570,512 + BBR_RS12540 0.73 +0.4 570,512 + BBR_RS12540 0.73 -2.1 570,512 + BBR_RS12540 0.73 -1.0 570,515 - BBR_RS12540 0.74 +0.2 570,517 + BBR_RS12540 0.74 +0.9 570,525 - BBR_RS12540 0.74 -0.3 570,525 - BBR_RS12540 0.74 -0.3 570,548 + BBR_RS12540 0.76 +1.3 570,571 + BBR_RS12540 0.77 -1.7 570,576 + BBR_RS12540 0.77 +1.5 570,576 + BBR_RS12540 0.77 -0.7 570,686 + BBR_RS12540 0.84 -0.0 570,695 + BBR_RS12540 0.85 -0.0 570,699 - BBR_RS12540 0.85 -0.2 570,720 + BBR_RS12540 0.86 -0.1 570,720 + BBR_RS12540 0.86 -0.6 570,837 + +1.4 570,853 - +0.2 570,880 + +0.4 570,881 - +0.1 570,888 - -1.0 570,888 - +0.4 570,888 - +0.5 570,919 + +0.1 570,940 + +0.4 570,940 - +0.5 570,940 - -0.5 570,946 - +0.4 571,007 - -0.7 571,060 + -0.1 571,060 - +0.1 571,088 + +0.7 571,088 + -1.8 571,088 + -0.5 571,096 - +0.5 571,102 + +0.0 571,102 + +0.0 571,102 + -0.2 571,102 + -0.0 571,102 + -0.2 571,103 + -0.6 571,103 - -0.4 571,103 - -0.1 571,110 - +0.2 571,110 - +0.4 571,110 - +0.0 571,110 - +0.4 571,110 - -0.1 571,110 - +0.1 571,110 - +0.3 571,122 + +0.1 571,131 + +0.9 571,168 - -0.3 571,193 - -0.1 571,211 - -0.4 571,211 - -1.2 571,211 - -0.7 571,211 - -0.9 571,464 + -1.2 571,464 - +0.0 571,464 - -1.3 571,500 + BBR_RS12545 0.11 -0.6 571,534 + BBR_RS12545 0.13 -1.7 571,615 + BBR_RS12545 0.18 +0.8 571,783 + BBR_RS12545 0.27 -1.9 571,813 + BBR_RS12545 0.29 -1.1 571,923 + BBR_RS12545 0.35 -1.3 571,937 + BBR_RS12545 0.36 -2.0 571,979 + BBR_RS12545 0.38 -0.4 572,177 - BBR_RS12545 0.50 -0.4 572,304 + BBR_RS12545 0.57 -0.7 572,350 + BBR_RS12545 0.59 -2.4 572,497 + BBR_RS12545 0.68 -1.3 572,543 + BBR_RS12545 0.70 -0.6 572,543 - BBR_RS12545 0.70 -1.0 572,604 + BBR_RS12545 0.74 -0.8 572,919 + -1.0 572,954 + +0.0 572,962 + -1.2 572,969 - +0.0 573,012 - -0.8 573,015 + +0.5 573,036 + -0.3 573,084 - -0.0 573,084 - -0.1 573,086 + +1.3 573,098 + +0.2 573,106 - +0.5 573,108 - +0.6 573,131 - -1.3 573,147 - -0.2 573,158 + -0.7 573,166 - -0.5 573,166 - -0.3 573,166 - -1.2 573,166 - -0.4 573,243 - -0.5 573,265 + -0.7 573,273 - -0.7 573,273 - -0.4 573,304 + -0.0 573,309 + -1.6 573,336 + BBR_RS12550 0.10 -0.4 573,361 - BBR_RS12550 0.12 -1.2 573,361 - BBR_RS12550 0.12 -0.2 573,366 - BBR_RS12550 0.12 +0.0 573,371 - BBR_RS12550 0.12 -0.8 573,375 + BBR_RS12550 0.13 -1.7 573,418 - BBR_RS12550 0.15 -2.0 573,418 - BBR_RS12550 0.15 -0.4 573,500 - BBR_RS12550 0.20 -0.6 573,594 + BBR_RS12550 0.25 -0.0 573,622 - BBR_RS12550 0.27 -0.1 573,642 + BBR_RS12550 0.28 -0.5 573,642 + BBR_RS12550 0.28 +1.2 573,648 + BBR_RS12550 0.29 +0.4 573,648 + BBR_RS12550 0.29 +0.0 573,665 - BBR_RS12550 0.29 -1.1 573,723 - BBR_RS12550 0.33 -0.1 573,738 + BBR_RS12550 0.34 -1.5 573,764 + BBR_RS12550 0.35 -0.2 573,769 + BBR_RS12550 0.36 +0.6 573,828 - BBR_RS12550 0.39 -0.3 573,830 + BBR_RS12550 0.39 -0.2 573,833 + BBR_RS12550 0.39 -0.7 573,838 - BBR_RS12550 0.40 +0.2 573,843 - BBR_RS12550 0.40 -1.8 573,875 + BBR_RS12550 0.42 -0.6 573,875 + BBR_RS12550 0.42 -0.2 573,895 + BBR_RS12550 0.43 -0.4 573,935 + BBR_RS12550 0.45 +1.5 573,943 - BBR_RS12550 0.46 -1.7 573,961 + BBR_RS12550 0.47 -0.1 574,052 + BBR_RS12550 0.52 -0.2
Or see this region's nucleotide sequence