Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11720

Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11715 and BBR_RS11720 are separated by 6 nucleotidesBBR_RS11720 and BBR_RS11725 are separated by 170 nucleotides BBR_RS11715: BBR_RS11715 - N-acetyltransferase, at 383,492 to 384,538 _RS11715 BBR_RS11720: BBR_RS11720 - DUF2469 domain-containing protein, at 384,545 to 384,859 _RS11720 BBR_RS11725: BBR_RS11725 - FAD-dependent oxidoreductase, at 385,030 to 386,643 _RS11725 Position (kb) 384 385Strain fitness (log2 ratio) -2 -1 0 1at 383.551 kb on + strandat 383.604 kb on + strand, within BBR_RS11715at 383.610 kb on + strand, within BBR_RS11715at 383.636 kb on - strand, within BBR_RS11715at 383.638 kb on + strand, within BBR_RS11715at 383.638 kb on + strand, within BBR_RS11715at 383.686 kb on - strand, within BBR_RS11715at 383.699 kb on + strand, within BBR_RS11715at 383.707 kb on + strand, within BBR_RS11715at 383.707 kb on + strand, within BBR_RS11715at 383.707 kb on + strand, within BBR_RS11715at 383.707 kb on + strand, within BBR_RS11715at 383.715 kb on - strand, within BBR_RS11715at 383.715 kb on - strand, within BBR_RS11715at 383.715 kb on - strand, within BBR_RS11715at 383.728 kb on + strand, within BBR_RS11715at 383.741 kb on + strand, within BBR_RS11715at 383.762 kb on + strand, within BBR_RS11715at 383.790 kb on + strand, within BBR_RS11715at 383.794 kb on + strand, within BBR_RS11715at 383.794 kb on + strand, within BBR_RS11715at 383.794 kb on + strand, within BBR_RS11715at 383.802 kb on - strand, within BBR_RS11715at 383.833 kb on + strand, within BBR_RS11715at 383.835 kb on - strand, within BBR_RS11715at 383.839 kb on + strand, within BBR_RS11715at 383.839 kb on + strand, within BBR_RS11715at 383.863 kb on + strand, within BBR_RS11715at 383.905 kb on - strand, within BBR_RS11715at 383.918 kb on + strand, within BBR_RS11715at 383.918 kb on + strand, within BBR_RS11715at 383.932 kb on + strand, within BBR_RS11715at 383.932 kb on + strand, within BBR_RS11715at 383.938 kb on + strand, within BBR_RS11715at 383.938 kb on + strand, within BBR_RS11715at 383.967 kb on + strand, within BBR_RS11715at 383.999 kb on + strand, within BBR_RS11715at 384.000 kb on + strand, within BBR_RS11715at 384.000 kb on + strand, within BBR_RS11715at 384.002 kb on - strand, within BBR_RS11715at 384.014 kb on + strand, within BBR_RS11715at 384.015 kb on + strand, within BBR_RS11715at 384.020 kb on + strand, within BBR_RS11715at 384.020 kb on + strand, within BBR_RS11715at 384.028 kb on - strand, within BBR_RS11715at 384.028 kb on - strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.038 kb on - strand, within BBR_RS11715at 384.108 kb on - strand, within BBR_RS11715at 384.108 kb on - strand, within BBR_RS11715at 384.119 kb on + strand, within BBR_RS11715at 384.119 kb on + strand, within BBR_RS11715at 384.127 kb on - strand, within BBR_RS11715at 384.259 kb on + strand, within BBR_RS11715at 384.259 kb on + strand, within BBR_RS11715at 384.282 kb on - strand, within BBR_RS11715at 384.282 kb on - strand, within BBR_RS11715at 384.294 kb on + strand, within BBR_RS11715at 384.294 kb on + strand, within BBR_RS11715at 384.312 kb on - strand, within BBR_RS11715at 384.314 kb on + strand, within BBR_RS11715at 384.317 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.330 kb on - strand, within BBR_RS11715at 384.330 kb on - strand, within BBR_RS11715at 384.338 kb on - strand, within BBR_RS11715at 384.342 kb on + strand, within BBR_RS11715at 384.342 kb on + strand, within BBR_RS11715at 384.361 kb on + strand, within BBR_RS11715at 384.372 kb on + strand, within BBR_RS11715at 384.385 kb on + strand, within BBR_RS11715at 384.388 kb on - strand, within BBR_RS11715at 384.400 kb on + strand, within BBR_RS11715at 384.414 kb on + strand, within BBR_RS11715at 384.422 kb on - strand, within BBR_RS11715at 384.429 kb on + strand, within BBR_RS11715at 384.429 kb on + strand, within BBR_RS11715at 384.431 kb on + strand, within BBR_RS11715at 384.437 kb on - strandat 384.437 kb on - strandat 384.439 kb on - strandat 384.439 kb on - strandat 384.474 kb on - strandat 384.492 kb on + strandat 384.493 kb on - strandat 384.495 kb on + strandat 384.495 kb on + strandat 384.497 kb on + strandat 384.500 kb on - strandat 384.500 kb on - strandat 384.502 kb on + strandat 384.597 kb on + strand, within BBR_RS11720at 384.614 kb on + strand, within BBR_RS11720at 384.645 kb on - strand, within BBR_RS11720at 384.662 kb on - strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.727 kb on - strand, within BBR_RS11720at 384.739 kb on + strand, within BBR_RS11720at 384.739 kb on + strand, within BBR_RS11720at 384.746 kb on + strand, within BBR_RS11720at 384.792 kb on + strand, within BBR_RS11720at 384.802 kb on + strand, within BBR_RS11720at 384.854 kb on + strandat 384.854 kb on + strandat 384.854 kb on + strandat 384.861 kb on + strandat 384.873 kb on - strandat 384.875 kb on + strandat 384.875 kb on + strandat 384.956 kb on + strandat 384.956 kb on + strandat 384.964 kb on - strandat 384.966 kb on + strandat 384.966 kb on + strandat 384.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
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383,551 + +0.1
383,604 + BBR_RS11715 0.11 +0.5
383,610 + BBR_RS11715 0.11 -0.6
383,636 - BBR_RS11715 0.14 +0.0
383,638 + BBR_RS11715 0.14 +0.1
383,638 + BBR_RS11715 0.14 +0.5
383,686 - BBR_RS11715 0.19 -0.5
383,699 + BBR_RS11715 0.20 -0.4
383,707 + BBR_RS11715 0.21 -0.3
383,707 + BBR_RS11715 0.21 -0.1
383,707 + BBR_RS11715 0.21 +0.3
383,707 + BBR_RS11715 0.21 +0.2
383,715 - BBR_RS11715 0.21 -0.3
383,715 - BBR_RS11715 0.21 +0.4
383,715 - BBR_RS11715 0.21 -0.1
383,728 + BBR_RS11715 0.23 -1.0
383,741 + BBR_RS11715 0.24 +0.2
383,762 + BBR_RS11715 0.26 +0.6
383,790 + BBR_RS11715 0.28 +0.3
383,794 + BBR_RS11715 0.29 +0.0
383,794 + BBR_RS11715 0.29 -0.4
383,794 + BBR_RS11715 0.29 +0.5
383,802 - BBR_RS11715 0.30 -0.2
383,833 + BBR_RS11715 0.33 +0.4
383,835 - BBR_RS11715 0.33 -0.3
383,839 + BBR_RS11715 0.33 -0.6
383,839 + BBR_RS11715 0.33 +1.2
383,863 + BBR_RS11715 0.35 +0.3
383,905 - BBR_RS11715 0.39 +0.4
383,918 + BBR_RS11715 0.41 -0.0
383,918 + BBR_RS11715 0.41 -1.3
383,932 + BBR_RS11715 0.42 -0.4
383,932 + BBR_RS11715 0.42 +0.0
383,938 + BBR_RS11715 0.43 +1.2
383,938 + BBR_RS11715 0.43 -0.1
383,967 + BBR_RS11715 0.45 +0.9
383,999 + BBR_RS11715 0.48 +0.0
384,000 + BBR_RS11715 0.49 -0.2
384,000 + BBR_RS11715 0.49 +0.7
384,002 - BBR_RS11715 0.49 -0.5
384,014 + BBR_RS11715 0.50 +0.9
384,015 + BBR_RS11715 0.50 -0.1
384,020 + BBR_RS11715 0.50 -0.4
384,020 + BBR_RS11715 0.50 +1.2
384,028 - BBR_RS11715 0.51 +0.5
384,028 - BBR_RS11715 0.51 -0.7
384,030 + BBR_RS11715 0.51 -0.4
384,030 + BBR_RS11715 0.51 +0.9
384,030 + BBR_RS11715 0.51 +0.3
384,030 + BBR_RS11715 0.51 +0.1
384,030 + BBR_RS11715 0.51 -0.5
384,038 - BBR_RS11715 0.52 -0.5
384,108 - BBR_RS11715 0.59 -0.4
384,108 - BBR_RS11715 0.59 +1.1
384,119 + BBR_RS11715 0.60 +0.5
384,119 + BBR_RS11715 0.60 -1.6
384,127 - BBR_RS11715 0.61 +0.2
384,259 + BBR_RS11715 0.73 -0.2
384,259 + BBR_RS11715 0.73 -0.3
384,282 - BBR_RS11715 0.75 -0.0
384,282 - BBR_RS11715 0.75 +0.3
384,294 + BBR_RS11715 0.77 -0.3
384,294 + BBR_RS11715 0.77 +0.4
384,312 - BBR_RS11715 0.78 -0.5
384,314 + BBR_RS11715 0.79 +0.1
384,317 + BBR_RS11715 0.79 -0.1
384,322 + BBR_RS11715 0.79 -0.4
384,322 + BBR_RS11715 0.79 +0.3
384,322 + BBR_RS11715 0.79 +0.2
384,322 + BBR_RS11715 0.79 +0.8
384,322 + BBR_RS11715 0.79 +0.4
384,322 + BBR_RS11715 0.79 +0.7
384,322 + BBR_RS11715 0.79 -0.2
384,322 + BBR_RS11715 0.79 -0.3
384,322 + BBR_RS11715 0.79 -0.3
384,330 - BBR_RS11715 0.80 +0.3
384,330 - BBR_RS11715 0.80 -1.0
384,338 - BBR_RS11715 0.81 +0.4
384,342 + BBR_RS11715 0.81 +0.4
384,342 + BBR_RS11715 0.81 +0.1
384,361 + BBR_RS11715 0.83 +0.6
384,372 + BBR_RS11715 0.84 +0.6
384,385 + BBR_RS11715 0.85 +0.4
384,388 - BBR_RS11715 0.86 -0.3
384,400 + BBR_RS11715 0.87 -0.2
384,414 + BBR_RS11715 0.88 +0.0
384,422 - BBR_RS11715 0.89 +1.2
384,429 + BBR_RS11715 0.89 -0.0
384,429 + BBR_RS11715 0.89 -1.4
384,431 + BBR_RS11715 0.90 +0.9
384,437 - +0.2
384,437 - +1.0
384,439 - -0.1
384,439 - -0.4
384,474 - +0.6
384,492 + +0.2
384,493 - -0.9
384,495 + +0.5
384,495 + +0.8
384,497 + +0.6
384,500 - +0.5
384,500 - -0.1
384,502 + +0.8
384,597 + BBR_RS11720 0.17 +0.8
384,614 + BBR_RS11720 0.22 -0.9
384,645 - BBR_RS11720 0.32 -0.2
384,662 - BBR_RS11720 0.37 -0.3
384,698 + BBR_RS11720 0.49 -2.0
384,698 + BBR_RS11720 0.49 -2.2
384,698 + BBR_RS11720 0.49 -1.0
384,698 + BBR_RS11720 0.49 -0.8
384,698 + BBR_RS11720 0.49 -0.6
384,727 - BBR_RS11720 0.58 -1.7
384,739 + BBR_RS11720 0.62 -1.9
384,739 + BBR_RS11720 0.62 -1.4
384,746 + BBR_RS11720 0.64 -2.6
384,792 + BBR_RS11720 0.78 +0.2
384,802 + BBR_RS11720 0.82 -1.4
384,854 + +0.8
384,854 + +0.3
384,854 + -0.3
384,861 + +0.6
384,873 - -0.3
384,875 + +0.5
384,875 + +1.0
384,956 + -0.2
384,956 + -0.2
384,964 - -0.8
384,966 + -0.3
384,966 + +1.0
384,966 + -0.5

Or see this region's nucleotide sequence