Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10620 and BBR_RS10625 are separated by 4 nucleotides BBR_RS10625 and BBR_RS10630 are separated by 30 nucleotides
BBR_RS10620: BBR_RS10620 - phosphoprotein phosphatase, at 101,123 to 102,742
_RS10620
BBR_RS10625: BBR_RS10625 - FHA domain-containing protein, at 102,747 to 103,271
_RS10625
BBR_RS10630: BBR_RS10630 - DUF2662 domain-containing protein, at 103,302 to 104,003
_RS10630
Position (kb) 102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 102.763 kb on - strand at 102.808 kb on - strand, within BBR_RS10625 at 102.808 kb on - strand, within BBR_RS10625 at 102.810 kb on - strand, within BBR_RS10625 at 102.860 kb on - strand, within BBR_RS10625 at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.312 kb on - strand at 103.332 kb on - strand at 103.337 kb on - strand at 104.032 kb on - strand at 104.039 kb on + strand at 104.039 kb on + strand at 104.047 kb on - strand at 104.047 kb on - strand at 104.050 kb on - strand at 104.055 kb on + strand at 104.061 kb on + strand at 104.069 kb on - strand at 104.109 kb on + strand at 104.128 kb on - strand at 104.128 kb on - strand at 104.141 kb on + strand at 104.143 kb on + strand at 104.146 kb on + strand at 104.146 kb on + strand at 104.151 kb on + strand at 104.151 kb on - strand at 104.171 kb on + strand at 104.171 kb on + strand at 104.181 kb on + strand at 104.181 kb on + strand at 104.183 kb on + strand at 104.186 kb on + strand at 104.189 kb on - strand at 104.189 kb on - strand at 104.193 kb on + strand at 104.193 kb on + strand at 104.193 kb on + strand at 104.193 kb on + strand at 104.194 kb on - strand at 104.194 kb on - strand at 104.194 kb on - strand at 104.201 kb on - strand at 104.201 kb on - strand at 104.201 kb on - strand at 104.201 kb on - strand at 104.212 kb on + strand at 104.235 kb on + strand at 104.235 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.245 kb on + strand at 104.245 kb on - strand at 104.245 kb on - strand at 104.245 kb on - strand at 104.245 kb on - strand at 104.246 kb on - strand at 104.263 kb on - strand at 104.263 kb on - strand at 104.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v remove 102,763 - -0.6 102,808 - BBR_RS10625 0.12 -2.3 102,808 - BBR_RS10625 0.12 -1.5 102,810 - BBR_RS10625 0.12 -2.8 102,860 - BBR_RS10625 0.22 +0.2 103,275 - -0.0 103,275 - -0.9 103,275 - -0.2 103,275 - -0.8 103,275 - -0.4 103,275 - +1.3 103,275 - -1.3 103,307 - -1.5 103,307 - -1.0 103,307 - -1.1 103,312 - -1.6 103,332 - -0.6 103,337 - -0.9 104,032 - -1.3 104,039 + -0.0 104,039 + +0.3 104,047 - -0.5 104,047 - -0.2 104,050 - -0.2 104,055 + -0.9 104,061 + +0.2 104,069 - -0.6 104,109 + -2.0 104,128 - -0.0 104,128 - -0.7 104,141 + +0.1 104,143 + +0.6 104,146 + -0.0 104,146 + -0.1 104,151 + +0.3 104,151 - +0.5 104,171 + -0.8 104,171 + -0.5 104,181 + -0.2 104,181 + -0.5 104,183 + +0.3 104,186 + -0.2 104,189 - -0.4 104,189 - -0.9 104,193 + -0.3 104,193 + +0.5 104,193 + +0.3 104,193 + -0.4 104,194 - +0.1 104,194 - +0.3 104,194 - +0.3 104,201 - -0.1 104,201 - -0.2 104,201 - +0.5 104,201 - -0.1 104,212 + -0.1 104,235 + -0.3 104,235 + -0.4 104,237 + +0.5 104,237 + +1.9 104,237 + +1.0 104,237 + +0.9 104,237 + +0.1 104,237 + -0.0 104,245 + -0.1 104,245 - +0.6 104,245 - -0.1 104,245 - -0.6 104,245 - +0.6 104,246 - -0.2 104,263 - -0.6 104,263 - +0.0 104,263 - +0.3
Or see this region's nucleotide sequence