Experiment: reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10575 and BBR_RS10580 are separated by 529 nucleotides BBR_RS10580 and BBR_RS10585 are separated by 88 nucleotides BBR_RS10585 and BBR_RS10590 overlap by 4 nucleotides
BBR_RS10575: BBR_RS10575 - rhomboid family intramembrane serine protease, at 90,455 to 91,195
_RS10575
BBR_RS10580: BBR_RS10580 - septation inhibitor protein, at 91,725 to 92,186
_RS10580
BBR_RS10585: BBR_RS10585 - DUF881 domain-containing protein, at 92,275 to 93,063
_RS10585
BBR_RS10590: BBR_RS10590 - class E sortase, at 93,060 to 94,265
_RS10590
Position (kb) 91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 90.729 kb on - strand, within BBR_RS10575 at 90.729 kb on - strand, within BBR_RS10575 at 90.729 kb on - strand, within BBR_RS10575 at 90.729 kb on - strand, within BBR_RS10575 at 90.729 kb on - strand, within BBR_RS10575 at 90.729 kb on - strand, within BBR_RS10575 at 90.732 kb on + strand, within BBR_RS10575 at 90.732 kb on + strand, within BBR_RS10575 at 90.737 kb on + strand, within BBR_RS10575 at 90.740 kb on - strand, within BBR_RS10575 at 90.756 kb on - strand, within BBR_RS10575 at 90.768 kb on + strand, within BBR_RS10575 at 90.782 kb on - strand, within BBR_RS10575 at 90.786 kb on + strand, within BBR_RS10575 at 90.808 kb on + strand, within BBR_RS10575 at 90.810 kb on + strand, within BBR_RS10575 at 90.810 kb on + strand, within BBR_RS10575 at 90.810 kb on + strand, within BBR_RS10575 at 90.816 kb on - strand, within BBR_RS10575 at 90.816 kb on - strand, within BBR_RS10575 at 90.816 kb on - strand, within BBR_RS10575 at 90.816 kb on - strand, within BBR_RS10575 at 90.816 kb on - strand, within BBR_RS10575 at 90.817 kb on + strand, within BBR_RS10575 at 90.817 kb on + strand, within BBR_RS10575 at 90.817 kb on + strand, within BBR_RS10575 at 90.817 kb on + strand, within BBR_RS10575 at 90.818 kb on - strand, within BBR_RS10575 at 90.824 kb on - strand, within BBR_RS10575 at 90.825 kb on - strand, within BBR_RS10575 at 90.827 kb on + strand, within BBR_RS10575 at 90.827 kb on + strand, within BBR_RS10575 at 90.827 kb on + strand, within BBR_RS10575 at 90.827 kb on + strand, within BBR_RS10575 at 90.835 kb on - strand, within BBR_RS10575 at 90.835 kb on - strand, within BBR_RS10575 at 90.835 kb on - strand, within BBR_RS10575 at 90.842 kb on + strand, within BBR_RS10575 at 90.850 kb on - strand, within BBR_RS10575 at 90.871 kb on + strand, within BBR_RS10575 at 90.881 kb on - strand, within BBR_RS10575 at 90.886 kb on + strand, within BBR_RS10575 at 90.907 kb on + strand, within BBR_RS10575 at 90.932 kb on + strand, within BBR_RS10575 at 90.942 kb on - strand, within BBR_RS10575 at 90.950 kb on - strand, within BBR_RS10575 at 90.955 kb on - strand, within BBR_RS10575 at 90.960 kb on - strand, within BBR_RS10575 at 90.962 kb on + strand, within BBR_RS10575 at 90.962 kb on + strand, within BBR_RS10575 at 90.977 kb on - strand, within BBR_RS10575 at 90.979 kb on + strand, within BBR_RS10575 at 90.979 kb on + strand, within BBR_RS10575 at 90.981 kb on + strand, within BBR_RS10575 at 91.008 kb on - strand, within BBR_RS10575 at 91.008 kb on - strand, within BBR_RS10575 at 91.023 kb on - strand, within BBR_RS10575 at 91.028 kb on + strand, within BBR_RS10575 at 91.031 kb on - strand, within BBR_RS10575 at 91.047 kb on + strand, within BBR_RS10575 at 91.050 kb on - strand, within BBR_RS10575 at 91.050 kb on - strand, within BBR_RS10575 at 91.091 kb on - strand, within BBR_RS10575 at 91.106 kb on + strand, within BBR_RS10575 at 91.109 kb on + strand, within BBR_RS10575 at 91.109 kb on + strand, within BBR_RS10575 at 91.109 kb on + strand, within BBR_RS10575 at 91.109 kb on + strand, within BBR_RS10575 at 91.116 kb on - strand, within BBR_RS10575 at 91.117 kb on - strand, within BBR_RS10575 at 91.117 kb on - strand, within BBR_RS10575 at 91.117 kb on - strand, within BBR_RS10575 at 91.130 kb on - strand at 91.138 kb on - strand at 91.138 kb on - strand at 91.138 kb on - strand at 91.147 kb on + strand at 91.172 kb on + strand at 91.178 kb on + strand at 91.200 kb on + strand at 91.211 kb on + strand at 91.211 kb on + strand at 91.225 kb on + strand at 91.244 kb on + strand at 91.249 kb on - strand at 91.252 kb on - strand at 91.262 kb on - strand at 91.330 kb on - strand at 91.365 kb on - strand at 91.398 kb on + strand at 91.422 kb on + strand at 91.482 kb on - strand at 91.489 kb on + strand at 91.489 kb on + strand at 91.507 kb on - strand at 91.541 kb on + strand at 91.541 kb on + strand at 91.549 kb on - strand at 91.559 kb on + strand at 91.561 kb on - strand at 91.561 kb on - strand at 91.602 kb on + strand at 91.671 kb on + strand at 91.692 kb on + strand at 91.692 kb on + strand at 91.700 kb on - strand at 91.708 kb on + strand at 91.731 kb on - strand at 91.831 kb on + strand, within BBR_RS10580 at 92.028 kb on - strand, within BBR_RS10580 at 92.028 kb on - strand, within BBR_RS10580 at 92.052 kb on - strand, within BBR_RS10580 at 92.142 kb on - strand at 92.151 kb on - strand at 92.169 kb on - strand at 92.174 kb on - strand at 92.184 kb on + strand at 92.192 kb on - strand at 92.198 kb on + strand at 92.198 kb on + strand at 92.198 kb on + strand at 92.206 kb on - strand at 92.206 kb on - strand at 92.206 kb on - strand at 92.215 kb on + strand at 92.215 kb on + strand at 92.223 kb on - strand at 92.234 kb on + strand at 92.234 kb on + strand at 92.242 kb on - strand at 92.249 kb on - strand at 92.290 kb on + strand at 92.290 kb on + strand at 92.290 kb on + strand at 92.290 kb on + strand at 92.290 kb on + strand at 92.298 kb on - strand at 92.298 kb on - strand at 92.298 kb on - strand at 92.314 kb on + strand at 92.314 kb on + strand at 92.316 kb on + strand at 92.322 kb on - strand at 92.334 kb on + strand at 93.001 kb on - strand at 93.027 kb on - strand at 93.029 kb on - strand at 93.031 kb on - strand at 93.033 kb on + strand at 93.033 kb on + strand at 93.033 kb on + strand at 93.033 kb on + strand at 93.033 kb on + strand at 93.033 kb on + strand at 93.035 kb on + strand at 93.041 kb on - strand at 93.041 kb on - strand at 93.041 kb on - strand at 93.041 kb on - strand at 93.041 kb on - strand at 93.041 kb on - strand at 93.045 kb on + strand at 93.048 kb on - strand at 93.048 kb on - strand at 93.053 kb on + strand at 93.074 kb on + strand at 93.074 kb on + strand at 93.074 kb on + strand at 93.082 kb on - strand at 93.108 kb on - strand at 93.109 kb on - strand at 93.109 kb on - strand at 93.113 kb on + strand at 93.134 kb on - strand at 93.136 kb on + strand at 93.142 kb on + strand at 93.146 kb on + strand at 93.146 kb on + strand at 93.147 kb on + strand at 93.147 kb on + strand at 93.155 kb on - strand at 93.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction reconstituted MRS with Bioecolians-prebiotic 0.5 %w/v remove 90,729 - BBR_RS10575 0.37 -0.1 90,729 - BBR_RS10575 0.37 -0.6 90,729 - BBR_RS10575 0.37 +0.3 90,729 - BBR_RS10575 0.37 -0.2 90,729 - BBR_RS10575 0.37 -1.0 90,729 - BBR_RS10575 0.37 +1.8 90,732 + BBR_RS10575 0.37 +0.2 90,732 + BBR_RS10575 0.37 +0.2 90,737 + BBR_RS10575 0.38 +0.3 90,740 - BBR_RS10575 0.38 +1.1 90,756 - BBR_RS10575 0.41 -0.6 90,768 + BBR_RS10575 0.42 -0.5 90,782 - BBR_RS10575 0.44 -0.6 90,786 + BBR_RS10575 0.45 -0.2 90,808 + BBR_RS10575 0.48 +0.2 90,810 + BBR_RS10575 0.48 -0.4 90,810 + BBR_RS10575 0.48 +0.5 90,810 + BBR_RS10575 0.48 -0.4 90,816 - BBR_RS10575 0.49 +0.9 90,816 - BBR_RS10575 0.49 +0.1 90,816 - BBR_RS10575 0.49 +0.2 90,816 - BBR_RS10575 0.49 -0.6 90,816 - BBR_RS10575 0.49 -0.3 90,817 + BBR_RS10575 0.49 -1.9 90,817 + BBR_RS10575 0.49 +0.2 90,817 + BBR_RS10575 0.49 -0.2 90,817 + BBR_RS10575 0.49 +0.3 90,818 - BBR_RS10575 0.49 -0.6 90,824 - BBR_RS10575 0.50 +0.4 90,825 - BBR_RS10575 0.50 -0.0 90,827 + BBR_RS10575 0.50 +0.3 90,827 + BBR_RS10575 0.50 +0.4 90,827 + BBR_RS10575 0.50 -0.1 90,827 + BBR_RS10575 0.50 -0.3 90,835 - BBR_RS10575 0.51 +0.3 90,835 - BBR_RS10575 0.51 +0.3 90,835 - BBR_RS10575 0.51 +0.2 90,842 + BBR_RS10575 0.52 +0.1 90,850 - BBR_RS10575 0.53 +0.5 90,871 + BBR_RS10575 0.56 -0.3 90,881 - BBR_RS10575 0.57 +1.0 90,886 + BBR_RS10575 0.58 -0.5 90,907 + BBR_RS10575 0.61 -0.0 90,932 + BBR_RS10575 0.64 -0.5 90,942 - BBR_RS10575 0.66 +0.5 90,950 - BBR_RS10575 0.67 +0.2 90,955 - BBR_RS10575 0.67 -0.2 90,960 - BBR_RS10575 0.68 +0.8 90,962 + BBR_RS10575 0.68 -0.0 90,962 + BBR_RS10575 0.68 -0.6 90,977 - BBR_RS10575 0.70 -0.2 90,979 + BBR_RS10575 0.71 -0.0 90,979 + BBR_RS10575 0.71 +1.2 90,981 + BBR_RS10575 0.71 -0.2 91,008 - BBR_RS10575 0.75 -0.5 91,008 - BBR_RS10575 0.75 +0.4 91,023 - BBR_RS10575 0.77 -0.6 91,028 + BBR_RS10575 0.77 -0.2 91,031 - BBR_RS10575 0.78 +0.6 91,047 + BBR_RS10575 0.80 +0.0 91,050 - BBR_RS10575 0.80 -0.5 91,050 - BBR_RS10575 0.80 +0.6 91,091 - BBR_RS10575 0.86 -0.0 91,106 + BBR_RS10575 0.88 -0.1 91,109 + BBR_RS10575 0.88 -0.6 91,109 + BBR_RS10575 0.88 -1.1 91,109 + BBR_RS10575 0.88 +0.3 91,109 + BBR_RS10575 0.88 +0.5 91,116 - BBR_RS10575 0.89 +0.4 91,117 - BBR_RS10575 0.89 +1.0 91,117 - BBR_RS10575 0.89 -0.1 91,117 - BBR_RS10575 0.89 +1.1 91,130 - -0.8 91,138 - -0.1 91,138 - -1.0 91,138 - -0.2 91,147 + +0.4 91,172 + +0.9 91,178 + +0.0 91,200 + -0.3 91,211 + +0.8 91,211 + -0.4 91,225 + -0.4 91,244 + -0.8 91,249 - -0.2 91,252 - -0.5 91,262 - +0.3 91,330 - +0.1 91,365 - -0.4 91,398 + +0.5 91,422 + +0.4 91,482 - +1.6 91,489 + +0.3 91,489 + +0.3 91,507 - -0.2 91,541 + +0.9 91,541 + +0.4 91,549 - +0.2 91,559 + -0.2 91,561 - +0.4 91,561 - -1.5 91,602 + -0.2 91,671 + -0.1 91,692 + -0.2 91,692 + -0.1 91,700 - -0.5 91,708 + -0.0 91,731 - -0.4 91,831 + BBR_RS10580 0.23 +0.2 92,028 - BBR_RS10580 0.66 -2.8 92,028 - BBR_RS10580 0.66 -1.4 92,052 - BBR_RS10580 0.71 -1.6 92,142 - -2.1 92,151 - +0.3 92,169 - -1.2 92,174 - +0.5 92,184 + -0.7 92,192 - -1.6 92,198 + -1.1 92,198 + -1.0 92,198 + -0.5 92,206 - -0.1 92,206 - -0.8 92,206 - -0.4 92,215 + -0.6 92,215 + +0.4 92,223 - +0.6 92,234 + +0.9 92,234 + +0.3 92,242 - +0.4 92,249 - -0.1 92,290 + +1.5 92,290 + -0.5 92,290 + -0.5 92,290 + +0.8 92,290 + +0.6 92,298 - +0.8 92,298 - +0.5 92,298 - +0.9 92,314 + +0.3 92,314 + -0.1 92,316 + +0.6 92,322 - +0.5 92,334 + +0.4 93,001 - +0.0 93,027 - +0.1 93,029 - -0.2 93,031 - -0.2 93,033 + -0.2 93,033 + +0.3 93,033 + -0.0 93,033 + +1.4 93,033 + +0.1 93,033 + +0.2 93,035 + -1.1 93,041 - +0.1 93,041 - -0.2 93,041 - -0.6 93,041 - +0.6 93,041 - -0.1 93,041 - -0.4 93,045 + -0.1 93,048 - +0.6 93,048 - -0.2 93,053 + +0.3 93,074 + +0.6 93,074 + +0.1 93,074 + +0.4 93,082 - -0.4 93,108 - +0.2 93,109 - -0.2 93,109 - +1.0 93,113 + -0.2 93,134 - +0.6 93,136 + -0.2 93,142 + -0.5 93,146 + +0.6 93,146 + +0.1 93,147 + -0.4 93,147 + +0.3 93,155 - -0.7 93,171 - +0.2
Or see this region's nucleotide sequence