Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3160

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3159 and DvMF_3160 are separated by 339 nucleotidesDvMF_3160 and DvMF_3161 are separated by 4 nucleotidesDvMF_3161 and DvMF_3162 are separated by 138 nucleotides DvMF_3159: DvMF_3159 - protein of unknown function DUF610 YibQ (RefSeq), at 3,984,270 to 3,985,901 _3159 DvMF_3160: DvMF_3160 - Nucleoside-diphosphate kinase (RefSeq), at 3,986,241 to 3,986,660 _3160 DvMF_3161: DvMF_3161 - pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data), at 3,986,665 to 3,987,474 _3161 DvMF_3162: DvMF_3162 - Smr protein/MutS2 (RefSeq), at 3,987,613 to 3,988,965 _3162 Position (kb) 3986 3987Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3985.464 kb on - strand, within DvMF_3159at 3985.492 kb on - strand, within DvMF_3159at 3985.831 kb on + strandat 3985.969 kb on + strandat 3985.971 kb on + strandat 3986.149 kb on + strandat 3986.170 kb on - strandat 3986.175 kb on - strandat 3986.934 kb on + strand, within DvMF_3161at 3987.042 kb on + strand, within DvMF_3161at 3987.050 kb on - strand, within DvMF_3161at 3987.191 kb on + strand, within DvMF_3161at 3987.276 kb on + strand, within DvMF_3161

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,985,464 - DvMF_3159 0.73 -1.5
3,985,492 - DvMF_3159 0.75 -0.8
3,985,831 + -0.2
3,985,969 + -0.7
3,985,971 + -2.0
3,986,149 + +0.4
3,986,170 - -1.1
3,986,175 - +0.2
3,986,934 + DvMF_3161 0.33 -4.6
3,987,042 + DvMF_3161 0.47 -2.2
3,987,050 - DvMF_3161 0.48 -5.8
3,987,191 + DvMF_3161 0.65 -1.6
3,987,276 + DvMF_3161 0.75 -5.1

Or see this region's nucleotide sequence