Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2773

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2772 and DvMF_2773 overlap by 4 nucleotidesDvMF_2773 and DvMF_2774 are separated by 327 nucleotides DvMF_2772: DvMF_2772 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 3,505,060 to 3,507,498 _2772 DvMF_2773: DvMF_2773 - Extracellular ligand-binding receptor (RefSeq), at 3,507,495 to 3,508,736 _2773 DvMF_2774: DvMF_2774 - AMMECR1 domain protein (RefSeq), at 3,509,064 to 3,509,765 _2774 Position (kb) 3507 3508 3509Strain fitness (log2 ratio) -1 0 1at 3506.588 kb on + strand, within DvMF_2772at 3506.634 kb on + strand, within DvMF_2772at 3506.818 kb on + strand, within DvMF_2772at 3506.826 kb on - strand, within DvMF_2772at 3506.860 kb on + strand, within DvMF_2772at 3507.008 kb on + strand, within DvMF_2772at 3507.285 kb on - strandat 3507.287 kb on + strandat 3507.463 kb on + strandat 3507.471 kb on - strandat 3507.541 kb on - strandat 3507.574 kb on - strandat 3507.651 kb on - strand, within DvMF_2773at 3507.662 kb on - strand, within DvMF_2773at 3507.753 kb on + strand, within DvMF_2773at 3507.867 kb on - strand, within DvMF_2773at 3507.907 kb on + strand, within DvMF_2773at 3507.941 kb on - strand, within DvMF_2773at 3508.120 kb on + strand, within DvMF_2773at 3508.147 kb on + strandat 3508.408 kb on - strand, within DvMF_2773at 3508.505 kb on - strand, within DvMF_2773at 3508.532 kb on - strand, within DvMF_2773at 3508.824 kb on - strandat 3508.843 kb on + strandat 3509.047 kb on + strandat 3509.047 kb on + strandat 3509.164 kb on + strand, within DvMF_2774at 3509.245 kb on + strand, within DvMF_2774at 3509.411 kb on - strand, within DvMF_2774at 3509.450 kb on - strand, within DvMF_2774

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,506,588 + DvMF_2772 0.63 -0.7
3,506,634 + DvMF_2772 0.65 +0.3
3,506,818 + DvMF_2772 0.72 -0.6
3,506,826 - DvMF_2772 0.72 -0.5
3,506,860 + DvMF_2772 0.74 -0.8
3,507,008 + DvMF_2772 0.80 -1.4
3,507,285 - -0.7
3,507,287 + -0.1
3,507,463 + -0.4
3,507,471 - +0.1
3,507,541 - -1.0
3,507,574 - -0.6
3,507,651 - DvMF_2773 0.13 -0.6
3,507,662 - DvMF_2773 0.13 -0.4
3,507,753 + DvMF_2773 0.21 -0.7
3,507,867 - DvMF_2773 0.30 -0.7
3,507,907 + DvMF_2773 0.33 -0.5
3,507,941 - DvMF_2773 0.36 -1.5
3,508,120 + DvMF_2773 0.50 -0.4
3,508,147 + -0.7
3,508,408 - DvMF_2773 0.74 -0.8
3,508,505 - DvMF_2773 0.81 -0.4
3,508,532 - DvMF_2773 0.83 -0.8
3,508,824 - -0.7
3,508,843 + -0.4
3,509,047 + -0.3
3,509,047 + -1.2
3,509,164 + DvMF_2774 0.14 -1.0
3,509,245 + DvMF_2774 0.26 -0.9
3,509,411 - DvMF_2774 0.49 -0.8
3,509,450 - DvMF_2774 0.55 -0.9

Or see this region's nucleotide sequence