Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2651

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2649 and DvMF_2650 are separated by 178 nucleotidesDvMF_2650 and DvMF_2651 are separated by 57 nucleotidesDvMF_2651 and DvMF_2652 are separated by 157 nucleotidesDvMF_2652 and DvMF_2653 are separated by 61 nucleotides DvMF_2649: DvMF_2649 - heat shock protein Hsp20 (RefSeq), at 3,350,757 to 3,351,314 _2649 DvMF_2650: DvMF_2650 - phosphodiesterase (RefSeq), at 3,351,493 to 3,352,041 _2650 DvMF_2651: DvMF_2651 - dihydrouridine synthase DuS (RefSeq), at 3,352,099 to 3,353,250 _2651 DvMF_2652: DvMF_2652 - transcriptional regulator, MerR family (RefSeq), at 3,353,408 to 3,353,779 _2652 DvMF_2653: DvMF_2653 - Carboxymuconolactone decarboxylase (RefSeq), at 3,353,841 to 3,354,257 _2653 Position (kb) 3352 3353 3354Strain fitness (log2 ratio) -1 0 1at 3351.132 kb on - strand, within DvMF_2649at 3351.397 kb on - strandat 3351.432 kb on + strandat 3351.720 kb on + strand, within DvMF_2650at 3351.726 kb on - strand, within DvMF_2650at 3352.268 kb on - strand, within DvMF_2651at 3352.428 kb on + strand, within DvMF_2651at 3352.436 kb on - strand, within DvMF_2651at 3352.441 kb on - strand, within DvMF_2651at 3352.695 kb on + strand, within DvMF_2651at 3352.779 kb on + strand, within DvMF_2651at 3352.787 kb on - strand, within DvMF_2651at 3352.787 kb on - strand, within DvMF_2651at 3352.831 kb on + strand, within DvMF_2651at 3352.839 kb on - strand, within DvMF_2651at 3352.857 kb on - strand, within DvMF_2651at 3353.385 kb on - strandat 3353.433 kb on + strandat 3353.433 kb on + strandat 3353.448 kb on + strand, within DvMF_2652at 3353.792 kb on + strandat 3353.833 kb on + strandat 3354.183 kb on - strand, within DvMF_2653

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,351,132 - DvMF_2649 0.67 -0.8
3,351,397 - -0.9
3,351,432 + -0.9
3,351,720 + DvMF_2650 0.41 -0.5
3,351,726 - DvMF_2650 0.42 -0.0
3,352,268 - DvMF_2651 0.15 -0.0
3,352,428 + DvMF_2651 0.29 -0.2
3,352,436 - DvMF_2651 0.29 +0.4
3,352,441 - DvMF_2651 0.30 -1.1
3,352,695 + DvMF_2651 0.52 -0.1
3,352,779 + DvMF_2651 0.59 -1.0
3,352,787 - DvMF_2651 0.60 -0.4
3,352,787 - DvMF_2651 0.60 +0.1
3,352,831 + DvMF_2651 0.64 -1.1
3,352,839 - DvMF_2651 0.64 +1.4
3,352,857 - DvMF_2651 0.66 -0.1
3,353,385 - -1.1
3,353,433 + +0.0
3,353,433 + -0.5
3,353,448 + DvMF_2652 0.11 -1.6
3,353,792 + -0.4
3,353,833 + -0.8
3,354,183 - DvMF_2653 0.82 -1.3

Or see this region's nucleotide sequence