Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2340 and DvMF_2341 are separated by 568 nucleotides DvMF_2341 and DvMF_2342 are separated by 28 nucleotides DvMF_2342 and DvMF_2343 are separated by 31 nucleotides DvMF_2343 and DvMF_2344 are separated by 76 nucleotides
DvMF_2340: DvMF_2340 - Sigma 54 interacting domain protein (RefSeq), at 2,949,515 to 2,952,328
_2340
DvMF_2341: DvMF_2341 - hypothetical protein (RefSeq), at 2,952,897 to 2,953,190
_2341
DvMF_2342: DvMF_2342 - protein of unknown function DUF81 (RefSeq), at 2,953,219 to 2,954,271
_2342
DvMF_2343: DvMF_2343 - lipoprotein, putative (RefSeq), at 2,954,303 to 2,954,908
_2343
DvMF_2344: DvMF_2344 - hypothetical protein (RefSeq), at 2,954,985 to 2,955,278
_2344
Position (kb)
2953
2954
2955 Strain fitness (log2 ratio)
-2
-1
0
1 at 2953.024 kb on + strand, within DvMF_2341 at 2953.201 kb on + strand at 2953.427 kb on + strand, within DvMF_2342 at 2953.759 kb on + strand, within DvMF_2342 at 2953.764 kb on + strand, within DvMF_2342 at 2953.863 kb on + strand, within DvMF_2342 at 2954.046 kb on + strand, within DvMF_2342 at 2954.071 kb on + strand, within DvMF_2342 at 2954.135 kb on - strand, within DvMF_2342 at 2954.142 kb on + strand, within DvMF_2342 at 2954.349 kb on + strand at 2954.369 kb on - strand, within DvMF_2343 at 2954.432 kb on + strand, within DvMF_2343 at 2954.490 kb on + strand, within DvMF_2343 at 2954.490 kb on + strand, within DvMF_2343 at 2954.490 kb on + strand, within DvMF_2343 at 2954.498 kb on - strand, within DvMF_2343 at 2954.498 kb on - strand, within DvMF_2343 at 2954.848 kb on + strand at 2955.011 kb on - strand at 2955.044 kb on + strand, within DvMF_2344 at 2955.144 kb on + strand, within DvMF_2344 at 2955.152 kb on - strand, within DvMF_2344
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,953,024 + DvMF_2341 0.43 -0.9 2,953,201 + -0.2 2,953,427 + DvMF_2342 0.20 -0.6 2,953,759 + DvMF_2342 0.51 -0.7 2,953,764 + DvMF_2342 0.52 -0.8 2,953,863 + DvMF_2342 0.61 +1.4 2,954,046 + DvMF_2342 0.79 -0.4 2,954,071 + DvMF_2342 0.81 -0.5 2,954,135 - DvMF_2342 0.87 -0.6 2,954,142 + DvMF_2342 0.88 -1.8 2,954,349 + -0.7 2,954,369 - DvMF_2343 0.11 -1.1 2,954,432 + DvMF_2343 0.21 -0.5 2,954,490 + DvMF_2343 0.31 -0.3 2,954,490 + DvMF_2343 0.31 -1.2 2,954,490 + DvMF_2343 0.31 -0.2 2,954,498 - DvMF_2343 0.32 -0.4 2,954,498 - DvMF_2343 0.32 -1.7 2,954,848 + -0.6 2,955,011 - -0.1 2,955,044 + DvMF_2344 0.20 -0.8 2,955,144 + DvMF_2344 0.54 -0.8 2,955,152 - DvMF_2344 0.57 -0.8
Or see this region's nucleotide sequence