Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1962

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1961 and DvMF_1962 are separated by 3 nucleotidesDvMF_1962 and hisG are separated by 293 nucleotides DvMF_1961: DvMF_1961 - polysaccharide deacetylase (RefSeq), at 2,423,918 to 2,424,913 _1961 DvMF_1962: DvMF_1962 - shikimate 5-dehydrogenase (RefSeq), at 2,424,917 to 2,425,864 _1962 DvMF_1963: hisG - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 2,426,158 to 2,427,039 hisG Position (kb) 2424 2425 2426Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2424.214 kb on + strand, within DvMF_1961at 2424.248 kb on - strand, within DvMF_1961at 2424.538 kb on + strand, within DvMF_1961at 2424.553 kb on - strand, within DvMF_1961at 2424.760 kb on - strand, within DvMF_1961at 2424.990 kb on - strandat 2426.464 kb on - strand, within hisGat 2426.477 kb on + strand, within hisGat 2426.477 kb on + strand, within hisGat 2426.579 kb on + strand, within hisGat 2426.581 kb on - strand, within hisGat 2426.587 kb on - strand, within hisGat 2426.587 kb on - strand, within hisGat 2426.587 kb on - strand, within hisGat 2426.657 kb on - strand, within hisGat 2426.861 kb on - strand, within hisG

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,424,214 + DvMF_1961 0.30 -0.8
2,424,248 - DvMF_1961 0.33 -0.1
2,424,538 + DvMF_1961 0.62 -0.6
2,424,553 - DvMF_1961 0.64 -0.7
2,424,760 - DvMF_1961 0.85 -1.0
2,424,990 - -0.4
2,426,464 - hisG DvMF_1963 0.35 -5.9
2,426,477 + hisG DvMF_1963 0.36 -5.6
2,426,477 + hisG DvMF_1963 0.36 -3.9
2,426,579 + hisG DvMF_1963 0.48 -4.3
2,426,581 - hisG DvMF_1963 0.48 -4.7
2,426,587 - hisG DvMF_1963 0.49 -1.6
2,426,587 - hisG DvMF_1963 0.49 -6.6
2,426,587 - hisG DvMF_1963 0.49 -5.5
2,426,657 - hisG DvMF_1963 0.57 -4.9
2,426,861 - hisG DvMF_1963 0.80 -3.1

Or see this region's nucleotide sequence